Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01084

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
1,191,365	+		MIT1002_01083	0.46	+1.7
1,191,370	+		MIT1002_01083	0.46	-0.2
1,191,380	+		MIT1002_01083	0.47	-0.2
1,191,383	-		MIT1002_01083	0.47	-0.2
1,191,410	+		MIT1002_01083	0.49	+0.6
1,191,410	+		MIT1002_01083	0.49	-0.1
1,191,418	-		MIT1002_01083	0.50	-0.3
1,191,605	+		MIT1002_01083	0.64	-0.0
1,191,626	-		MIT1002_01083	0.65	+0.4
1,191,714	-		MIT1002_01083	0.72	+0.0
1,191,719	+		MIT1002_01083	0.72	-1.1
1,191,749	-		MIT1002_01083	0.74	-0.6
1,191,897	-		MIT1002_01083	0.86	-0.5
1,191,897	-		MIT1002_01083	0.86	-0.6
1,191,924	+		MIT1002_01083	0.88	-0.4
1,191,938	-		MIT1002_01083	0.89	+0.3
1,191,938	-		MIT1002_01083	0.89	-0.1
1,191,938	-		MIT1002_01083	0.89	-0.5
1,191,948	-		MIT1002_01083	0.89	-1.4
1,191,953	-		MIT1002_01083	0.90	+0.8
1,191,972	+				-1.9
1,191,994	+				-0.8
1,192,002	-				+0.1
1,192,071	+				-0.3
1,192,079	-				+0.2
1,192,095	+				-0.3
1,192,271	+				-0.5
1,192,292	-				+3.4
1,192,292	-				-1.2
1,192,300	-				-0.7
1,192,326	-				+1.0
1,192,345	-				-0.8
1,192,350	+				-0.7
1,192,431	+		MIT1002_01084	0.29	-3.3
1,192,553	-		MIT1002_01084	0.66	-2.4
1,192,553	-		MIT1002_01084	0.66	-1.0
1,192,565	-		MIT1002_01084	0.69	-1.3
1,192,569	-		MIT1002_01084	0.71	-3.5
1,192,614	-		MIT1002_01084	0.84	-0.5
1,192,695	+				-0.4
1,192,696	+				+0.3
1,192,704	-				+0.5
1,192,711	-				+0.5
1,192,721	+				+0.2
1,192,729	-				-1.8
1,192,771	+				-0.3
1,192,771	+				+0.2
1,192,771	+				-0.3
1,192,798	+				+0.3
1,192,900	+		MIT1002_01085	0.13	-0.5
1,192,900	+		MIT1002_01085	0.13	-0.6
1,192,955	+		MIT1002_01085	0.16	-1.2
1,192,969	-		MIT1002_01085	0.17	-2.5
1,193,097	+		MIT1002_01085	0.25	-0.8
1,193,183	-		MIT1002_01085	0.30	-0.7
1,193,288	+		MIT1002_01085	0.36	-1.2
1,193,338	+		MIT1002_01085	0.39	+1.5
1,193,492	+		MIT1002_01085	0.48	-1.7
1,193,526	+		MIT1002_01085	0.50	-0.3
1,193,631	+		MIT1002_01085	0.56	+0.0
1,193,663	+		MIT1002_01085	0.58	-1.2