Experiment: monoculture; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00842 and MIT1002_00843 are separated by 82 nucleotides MIT1002_00843 and MIT1002_00844 are separated by 255 nucleotides
MIT1002_00842: MIT1002_00842 - Periplasmic pH-dependent serine endoprotease DegQ precursor, at 922,826 to 924,193
_00842
MIT1002_00843: MIT1002_00843 - hypothetical protein, at 924,276 to 924,710
_00843
MIT1002_00844: MIT1002_00844 - AFG1-like ATPase, at 924,966 to 926,063
_00844
Position (kb) 924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 923.467 kb on + strand, within MIT1002_00842 at 923.590 kb on - strand, within MIT1002_00842 at 923.596 kb on + strand, within MIT1002_00842 at 923.620 kb on - strand, within MIT1002_00842 at 923.627 kb on + strand, within MIT1002_00842 at 923.627 kb on + strand, within MIT1002_00842 at 923.635 kb on - strand, within MIT1002_00842 at 923.635 kb on - strand, within MIT1002_00842 at 923.644 kb on + strand, within MIT1002_00842 at 923.703 kb on + strand, within MIT1002_00842 at 923.711 kb on - strand, within MIT1002_00842 at 923.768 kb on - strand, within MIT1002_00842 at 923.961 kb on + strand, within MIT1002_00842 at 923.988 kb on + strand, within MIT1002_00842 at 923.988 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.064 kb on + strand at 924.135 kb on - strand at 924.238 kb on + strand at 924.248 kb on + strand at 924.374 kb on - strand, within MIT1002_00843 at 924.381 kb on - strand, within MIT1002_00843 at 924.452 kb on + strand, within MIT1002_00843 at 924.460 kb on - strand, within MIT1002_00843 at 924.530 kb on + strand, within MIT1002_00843 at 924.530 kb on + strand, within MIT1002_00843 at 924.538 kb on - strand, within MIT1002_00843 at 924.539 kb on - strand, within MIT1002_00843 at 924.564 kb on - strand, within MIT1002_00843 at 924.608 kb on + strand, within MIT1002_00843 at 924.608 kb on + strand, within MIT1002_00843 at 924.608 kb on + strand, within MIT1002_00843 at 924.613 kb on + strand, within MIT1002_00843 at 924.627 kb on + strand, within MIT1002_00843 at 924.694 kb on + strand at 924.727 kb on + strand at 924.812 kb on - strand at 924.899 kb on - strand at 924.915 kb on + strand at 925.002 kb on - strand at 925.087 kb on - strand, within MIT1002_00844 at 925.150 kb on - strand, within MIT1002_00844 at 925.152 kb on - strand, within MIT1002_00844 at 925.157 kb on - strand, within MIT1002_00844 at 925.217 kb on + strand, within MIT1002_00844 at 925.281 kb on + strand, within MIT1002_00844 at 925.446 kb on - strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.516 kb on - strand, within MIT1002_00844 at 925.688 kb on - strand, within MIT1002_00844 at 925.697 kb on - strand, within MIT1002_00844
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2 remove 923,467 + MIT1002_00842 0.47 +0.2 923,590 - MIT1002_00842 0.56 -1.7 923,596 + MIT1002_00842 0.56 -0.1 923,620 - MIT1002_00842 0.58 -0.8 923,627 + MIT1002_00842 0.59 -0.5 923,627 + MIT1002_00842 0.59 -1.6 923,635 - MIT1002_00842 0.59 -1.3 923,635 - MIT1002_00842 0.59 -1.2 923,644 + MIT1002_00842 0.60 +0.7 923,703 + MIT1002_00842 0.64 -0.6 923,711 - MIT1002_00842 0.65 +0.0 923,768 - MIT1002_00842 0.69 +2.4 923,961 + MIT1002_00842 0.83 -1.5 923,988 + MIT1002_00842 0.85 -0.5 923,988 + MIT1002_00842 0.85 +1.3 923,998 + MIT1002_00842 0.86 +0.4 923,998 + MIT1002_00842 0.86 +0.6 923,998 + MIT1002_00842 0.86 +2.2 923,998 + MIT1002_00842 0.86 +1.2 924,006 - MIT1002_00842 0.86 +0.2 924,006 - MIT1002_00842 0.86 -0.1 924,006 - MIT1002_00842 0.86 -0.2 924,006 - MIT1002_00842 0.86 -0.2 924,006 - MIT1002_00842 0.86 -0.2 924,006 - MIT1002_00842 0.86 -1.2 924,006 - MIT1002_00842 0.86 -0.7 924,064 + -1.4 924,135 - +0.8 924,238 + +1.0 924,248 + -1.2 924,374 - MIT1002_00843 0.23 -3.2 924,381 - MIT1002_00843 0.24 -3.4 924,452 + MIT1002_00843 0.40 -3.7 924,460 - MIT1002_00843 0.42 +0.3 924,530 + MIT1002_00843 0.58 -1.3 924,530 + MIT1002_00843 0.58 -2.4 924,538 - MIT1002_00843 0.60 -0.9 924,539 - MIT1002_00843 0.60 -2.9 924,564 - MIT1002_00843 0.66 -1.5 924,608 + MIT1002_00843 0.76 +0.3 924,608 + MIT1002_00843 0.76 -1.6 924,608 + MIT1002_00843 0.76 -2.4 924,613 + MIT1002_00843 0.77 -0.7 924,627 + MIT1002_00843 0.81 -1.0 924,694 + -0.4 924,727 + -0.2 924,812 - +0.1 924,899 - -2.2 924,915 + -0.0 925,002 - -1.5 925,087 - MIT1002_00844 0.11 -1.9 925,150 - MIT1002_00844 0.17 -2.5 925,152 - MIT1002_00844 0.17 -0.2 925,157 - MIT1002_00844 0.17 -1.0 925,217 + MIT1002_00844 0.23 -0.4 925,281 + MIT1002_00844 0.29 +0.2 925,446 - MIT1002_00844 0.44 -0.6 925,508 + MIT1002_00844 0.49 -0.8 925,508 + MIT1002_00844 0.49 +1.0 925,508 + MIT1002_00844 0.49 +0.8 925,508 + MIT1002_00844 0.49 -0.2 925,508 + MIT1002_00844 0.49 -0.9 925,516 - MIT1002_00844 0.50 -2.8 925,688 - MIT1002_00844 0.66 +0.2 925,697 - MIT1002_00844 0.67 -0.0
Or see this region's nucleotide sequence