Experiment: monoculture; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00787 and MIT1002_00788 are separated by 243 nucleotides MIT1002_00788 and MIT1002_00789 are separated by 78 nucleotides MIT1002_00789 and MIT1002_00790 are separated by 55 nucleotides
MIT1002_00787: MIT1002_00787 - Thiol:disulfide interchange protein DsbC precursor, at 872,365 to 873,087
_00787
MIT1002_00788: MIT1002_00788 - Single-stranded-DNA-specific exonuclease RecJ, at 873,331 to 875,052
_00788
MIT1002_00789: MIT1002_00789 - hypothetical protein, at 875,131 to 875,412
_00789
MIT1002_00790: MIT1002_00790 - Recombination protein O, at 875,468 to 876,181
_00790
Position (kb) 873
874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 872.335 kb on - strand at 872.431 kb on - strand at 872.449 kb on + strand, within MIT1002_00787 at 872.506 kb on - strand, within MIT1002_00787 at 872.535 kb on - strand, within MIT1002_00787 at 872.540 kb on - strand, within MIT1002_00787 at 872.581 kb on - strand, within MIT1002_00787 at 872.806 kb on + strand, within MIT1002_00787 at 872.811 kb on - strand, within MIT1002_00787 at 872.814 kb on - strand, within MIT1002_00787 at 872.833 kb on + strand, within MIT1002_00787 at 872.833 kb on + strand, within MIT1002_00787 at 872.833 kb on + strand, within MIT1002_00787 at 872.833 kb on + strand, within MIT1002_00787 at 872.833 kb on + strand, within MIT1002_00787 at 872.868 kb on + strand, within MIT1002_00787 at 872.972 kb on - strand, within MIT1002_00787 at 873.015 kb on + strand at 873.021 kb on - strand at 873.075 kb on - strand at 873.087 kb on - strand at 873.090 kb on + strand at 873.098 kb on - strand at 873.289 kb on + strand at 873.309 kb on + strand at 873.311 kb on + strand at 873.311 kb on + strand at 873.311 kb on - strand at 873.319 kb on - strand at 873.350 kb on + strand at 873.357 kb on + strand at 873.452 kb on + strand at 873.461 kb on + strand at 873.461 kb on + strand at 873.488 kb on - strand at 873.493 kb on - strand at 873.593 kb on + strand, within MIT1002_00788 at 873.675 kb on + strand, within MIT1002_00788 at 873.687 kb on + strand, within MIT1002_00788 at 873.703 kb on - strand, within MIT1002_00788 at 873.705 kb on - strand, within MIT1002_00788 at 873.729 kb on + strand, within MIT1002_00788 at 873.762 kb on - strand, within MIT1002_00788 at 873.779 kb on - strand, within MIT1002_00788 at 874.011 kb on + strand, within MIT1002_00788 at 874.074 kb on - strand, within MIT1002_00788 at 874.101 kb on - strand, within MIT1002_00788 at 874.101 kb on - strand, within MIT1002_00788 at 874.101 kb on - strand, within MIT1002_00788 at 874.106 kb on - strand, within MIT1002_00788 at 874.117 kb on + strand, within MIT1002_00788 at 874.158 kb on - strand, within MIT1002_00788 at 874.158 kb on - strand, within MIT1002_00788 at 874.173 kb on - strand, within MIT1002_00788 at 874.184 kb on + strand, within MIT1002_00788 at 874.184 kb on + strand, within MIT1002_00788 at 874.192 kb on - strand, within MIT1002_00788 at 874.192 kb on - strand, within MIT1002_00788 at 874.368 kb on + strand, within MIT1002_00788 at 874.376 kb on - strand, within MIT1002_00788 at 874.389 kb on - strand, within MIT1002_00788 at 874.420 kb on - strand, within MIT1002_00788 at 874.446 kb on - strand, within MIT1002_00788 at 874.506 kb on + strand, within MIT1002_00788 at 874.514 kb on - strand, within MIT1002_00788 at 874.577 kb on + strand, within MIT1002_00788 at 874.577 kb on + strand, within MIT1002_00788 at 874.577 kb on + strand, within MIT1002_00788 at 874.577 kb on + strand, within MIT1002_00788 at 874.580 kb on - strand, within MIT1002_00788 at 874.585 kb on - strand, within MIT1002_00788 at 874.585 kb on - strand, within MIT1002_00788 at 874.621 kb on + strand, within MIT1002_00788 at 874.645 kb on - strand, within MIT1002_00788 at 874.698 kb on + strand, within MIT1002_00788 at 874.752 kb on + strand, within MIT1002_00788 at 874.760 kb on - strand, within MIT1002_00788 at 874.776 kb on - strand, within MIT1002_00788 at 874.794 kb on - strand, within MIT1002_00788 at 874.802 kb on + strand, within MIT1002_00788 at 874.810 kb on - strand, within MIT1002_00788 at 874.848 kb on + strand, within MIT1002_00788 at 874.903 kb on - strand at 874.956 kb on + strand at 875.070 kb on - strand at 875.082 kb on + strand at 875.221 kb on + strand, within MIT1002_00789 at 875.229 kb on - strand, within MIT1002_00789 at 875.257 kb on - strand, within MIT1002_00789 at 875.264 kb on + strand, within MIT1002_00789 at 875.272 kb on - strand, within MIT1002_00789 at 875.272 kb on - strand, within MIT1002_00789 at 875.318 kb on - strand, within MIT1002_00789 at 875.454 kb on - strand at 875.460 kb on + strand at 875.490 kb on + strand at 875.490 kb on + strand at 875.490 kb on + strand at 875.498 kb on - strand at 875.498 kb on - strand at 875.498 kb on - strand at 875.507 kb on + strand at 875.511 kb on + strand at 875.517 kb on - strand at 875.617 kb on + strand, within MIT1002_00790 at 875.699 kb on - strand, within MIT1002_00790 at 875.703 kb on + strand, within MIT1002_00790 at 875.711 kb on - strand, within MIT1002_00790 at 875.711 kb on - strand, within MIT1002_00790 at 875.723 kb on + strand, within MIT1002_00790 at 875.723 kb on + strand, within MIT1002_00790 at 875.728 kb on + strand, within MIT1002_00790 at 875.731 kb on - strand, within MIT1002_00790 at 875.742 kb on + strand, within MIT1002_00790 at 875.787 kb on + strand, within MIT1002_00790 at 875.804 kb on + strand, within MIT1002_00790 at 875.844 kb on + strand, within MIT1002_00790 at 875.844 kb on + strand, within MIT1002_00790 at 875.852 kb on - strand, within MIT1002_00790 at 875.852 kb on - strand, within MIT1002_00790 at 875.864 kb on - strand, within MIT1002_00790 at 875.864 kb on - strand, within MIT1002_00790 at 875.902 kb on + strand, within MIT1002_00790 at 875.937 kb on - strand, within MIT1002_00790 at 875.941 kb on + strand, within MIT1002_00790 at 875.972 kb on + strand, within MIT1002_00790 at 876.020 kb on + strand, within MIT1002_00790
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2 remove 872,335 - +0.1 872,431 - -1.2 872,449 + MIT1002_00787 0.12 -0.3 872,506 - MIT1002_00787 0.20 -0.6 872,535 - MIT1002_00787 0.24 +0.5 872,540 - MIT1002_00787 0.24 -0.2 872,581 - MIT1002_00787 0.30 -0.5 872,806 + MIT1002_00787 0.61 +0.7 872,811 - MIT1002_00787 0.62 -1.4 872,814 - MIT1002_00787 0.62 -0.3 872,833 + MIT1002_00787 0.65 +0.2 872,833 + MIT1002_00787 0.65 -1.0 872,833 + MIT1002_00787 0.65 -0.2 872,833 + MIT1002_00787 0.65 +2.1 872,833 + MIT1002_00787 0.65 -1.5 872,868 + MIT1002_00787 0.70 -1.1 872,972 - MIT1002_00787 0.84 -0.2 873,015 + -1.9 873,021 - -1.2 873,075 - -0.8 873,087 - +1.1 873,090 + +1.4 873,098 - +1.0 873,289 + -0.1 873,309 + -0.9 873,311 + +0.3 873,311 + +0.7 873,311 - -0.8 873,319 - -0.3 873,350 + +0.0 873,357 + -0.1 873,452 + +0.7 873,461 + -0.2 873,461 + +0.0 873,488 - +0.3 873,493 - -1.0 873,593 + MIT1002_00788 0.15 -1.2 873,675 + MIT1002_00788 0.20 -0.4 873,687 + MIT1002_00788 0.21 -0.3 873,703 - MIT1002_00788 0.22 -1.5 873,705 - MIT1002_00788 0.22 +1.3 873,729 + MIT1002_00788 0.23 -1.0 873,762 - MIT1002_00788 0.25 -1.0 873,779 - MIT1002_00788 0.26 +0.2 874,011 + MIT1002_00788 0.39 -2.0 874,074 - MIT1002_00788 0.43 -0.2 874,101 - MIT1002_00788 0.45 -1.4 874,101 - MIT1002_00788 0.45 +1.7 874,101 - MIT1002_00788 0.45 -1.2 874,106 - MIT1002_00788 0.45 -1.8 874,117 + MIT1002_00788 0.46 -1.4 874,158 - MIT1002_00788 0.48 -0.2 874,158 - MIT1002_00788 0.48 +0.1 874,173 - MIT1002_00788 0.49 +2.4 874,184 + MIT1002_00788 0.50 -1.0 874,184 + MIT1002_00788 0.50 -0.5 874,192 - MIT1002_00788 0.50 -0.2 874,192 - MIT1002_00788 0.50 -3.3 874,368 + MIT1002_00788 0.60 -1.1 874,376 - MIT1002_00788 0.61 -2.0 874,389 - MIT1002_00788 0.61 -2.0 874,420 - MIT1002_00788 0.63 -0.1 874,446 - MIT1002_00788 0.65 +1.0 874,506 + MIT1002_00788 0.68 +0.2 874,514 - MIT1002_00788 0.69 -0.1 874,577 + MIT1002_00788 0.72 -0.5 874,577 + MIT1002_00788 0.72 +0.4 874,577 + MIT1002_00788 0.72 +0.3 874,577 + MIT1002_00788 0.72 -0.5 874,580 - MIT1002_00788 0.73 -0.5 874,585 - MIT1002_00788 0.73 +0.0 874,585 - MIT1002_00788 0.73 +0.4 874,621 + MIT1002_00788 0.75 -0.2 874,645 - MIT1002_00788 0.76 +0.3 874,698 + MIT1002_00788 0.79 +0.3 874,752 + MIT1002_00788 0.83 -0.7 874,760 - MIT1002_00788 0.83 +0.1 874,776 - MIT1002_00788 0.84 -2.0 874,794 - MIT1002_00788 0.85 +1.4 874,802 + MIT1002_00788 0.85 +0.0 874,810 - MIT1002_00788 0.86 +1.1 874,848 + MIT1002_00788 0.88 +0.4 874,903 - -1.8 874,956 + +1.2 875,070 - +3.0 875,082 + +1.2 875,221 + MIT1002_00789 0.32 -0.5 875,229 - MIT1002_00789 0.35 +0.3 875,257 - MIT1002_00789 0.45 +0.1 875,264 + MIT1002_00789 0.47 +1.3 875,272 - MIT1002_00789 0.50 -0.2 875,272 - MIT1002_00789 0.50 +0.3 875,318 - MIT1002_00789 0.66 +0.6 875,454 - +0.3 875,460 + -1.3 875,490 + -1.0 875,490 + +0.8 875,490 + -1.2 875,498 - -2.5 875,498 - +0.7 875,498 - +1.0 875,507 + +0.5 875,511 + +0.1 875,517 - +0.9 875,617 + MIT1002_00790 0.21 +0.3 875,699 - MIT1002_00790 0.32 -1.3 875,703 + MIT1002_00790 0.33 +0.5 875,711 - MIT1002_00790 0.34 +0.6 875,711 - MIT1002_00790 0.34 -1.2 875,723 + MIT1002_00790 0.36 +1.3 875,723 + MIT1002_00790 0.36 -0.7 875,728 + MIT1002_00790 0.36 -0.1 875,731 - MIT1002_00790 0.37 -1.5 875,742 + MIT1002_00790 0.38 +0.9 875,787 + MIT1002_00790 0.45 -0.1 875,804 + MIT1002_00790 0.47 -1.8 875,844 + MIT1002_00790 0.53 -0.8 875,844 + MIT1002_00790 0.53 +0.9 875,852 - MIT1002_00790 0.54 -0.4 875,852 - MIT1002_00790 0.54 -0.9 875,864 - MIT1002_00790 0.55 -0.6 875,864 - MIT1002_00790 0.55 -2.4 875,902 + MIT1002_00790 0.61 -1.0 875,937 - MIT1002_00790 0.66 +0.0 875,941 + MIT1002_00790 0.66 -3.7 875,972 + MIT1002_00790 0.71 -0.1 876,020 + MIT1002_00790 0.77 +1.3
Or see this region's nucleotide sequence