Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00760

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00758 and MIT1002_00759 are separated by 2 nucleotidesMIT1002_00759 and MIT1002_00760 are separated by 32 nucleotidesMIT1002_00760 and MIT1002_00761 are separated by 3 nucleotidesMIT1002_00761 and MIT1002_00762 are separated by 6 nucleotides MIT1002_00758: MIT1002_00758 - Biopolymer transport protein ExbB, at 834,196 to 835,560 _00758 MIT1002_00759: MIT1002_00759 - protein TolQ, at 835,563 to 836,081 _00759 MIT1002_00760: MIT1002_00760 - Biopolymer transport protein ExbD, at 836,114 to 836,521 _00760 MIT1002_00761: MIT1002_00761 - transport protein TonB, at 836,525 to 837,133 _00761 MIT1002_00762: MIT1002_00762 - Anaphase-promoting complex, cyclosome, subunit 3, at 837,140 to 838,498 _00762 Position (kb) 836 837Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 835.117 kb on - strand, within MIT1002_00758at 835.134 kb on + strand, within MIT1002_00758at 835.316 kb on - strand, within MIT1002_00758at 835.341 kb on + strand, within MIT1002_00758at 835.341 kb on + strand, within MIT1002_00758at 835.349 kb on - strand, within MIT1002_00758at 835.349 kb on - strand, within MIT1002_00758at 835.376 kb on - strand, within MIT1002_00758at 835.376 kb on - strand, within MIT1002_00758at 835.437 kb on - strandat 835.464 kb on + strandat 835.472 kb on - strandat 835.472 kb on - strandat 835.472 kb on - strandat 835.472 kb on - strandat 835.476 kb on + strandat 835.477 kb on - strandat 835.477 kb on - strandat 835.485 kb on - strandat 835.509 kb on - strandat 835.555 kb on + strandat 835.562 kb on - strandat 835.614 kb on + strandat 835.630 kb on - strand, within MIT1002_00759at 835.659 kb on + strand, within MIT1002_00759at 835.734 kb on - strand, within MIT1002_00759at 835.865 kb on - strand, within MIT1002_00759at 835.922 kb on - strand, within MIT1002_00759at 835.928 kb on - strand, within MIT1002_00759at 835.937 kb on + strand, within MIT1002_00759at 836.057 kb on - strandat 836.057 kb on - strandat 836.084 kb on - strandat 836.092 kb on + strandat 836.100 kb on - strandat 836.249 kb on - strand, within MIT1002_00760at 836.256 kb on + strand, within MIT1002_00760at 836.363 kb on + strand, within MIT1002_00760at 836.382 kb on - strand, within MIT1002_00760at 836.404 kb on + strand, within MIT1002_00760at 836.515 kb on - strandat 836.576 kb on - strandat 836.632 kb on + strand, within MIT1002_00761at 836.661 kb on + strand, within MIT1002_00761at 836.669 kb on - strand, within MIT1002_00761at 836.726 kb on - strand, within MIT1002_00761at 836.749 kb on + strand, within MIT1002_00761at 836.869 kb on - strand, within MIT1002_00761at 836.930 kb on - strand, within MIT1002_00761at 836.930 kb on - strand, within MIT1002_00761at 837.113 kb on - strandat 837.174 kb on - strandat 837.195 kb on + strandat 837.201 kb on + strandat 837.249 kb on + strandat 837.270 kb on - strandat 837.274 kb on - strandat 837.306 kb on + strand, within MIT1002_00762at 837.343 kb on - strand, within MIT1002_00762at 837.352 kb on + strand, within MIT1002_00762at 837.352 kb on + strand, within MIT1002_00762at 837.418 kb on + strand, within MIT1002_00762at 837.485 kb on + strand, within MIT1002_00762at 837.485 kb on + strand, within MIT1002_00762at 837.503 kb on + strand, within MIT1002_00762at 837.503 kb on + strand, within MIT1002_00762at 837.517 kb on + strand, within MIT1002_00762

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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835,117 - MIT1002_00758 0.67 -4.0
835,134 + MIT1002_00758 0.69 -3.0
835,316 - MIT1002_00758 0.82 -0.7
835,341 + MIT1002_00758 0.84 -3.5
835,341 + MIT1002_00758 0.84 -4.4
835,349 - MIT1002_00758 0.84 -2.5
835,349 - MIT1002_00758 0.84 -2.0
835,376 - MIT1002_00758 0.86 -2.8
835,376 - MIT1002_00758 0.86 -2.8
835,437 - -4.4
835,464 + -2.0
835,472 - -3.4
835,472 - -0.5
835,472 - -2.2
835,472 - +0.6
835,476 + -3.7
835,477 - -4.4
835,477 - -1.6
835,485 - -2.7
835,509 - -2.7
835,555 + -2.5
835,562 - -3.5
835,614 + -6.5
835,630 - MIT1002_00759 0.13 -3.4
835,659 + MIT1002_00759 0.18 -1.8
835,734 - MIT1002_00759 0.33 -2.8
835,865 - MIT1002_00759 0.58 -4.1
835,922 - MIT1002_00759 0.69 -2.3
835,928 - MIT1002_00759 0.70 -1.8
835,937 + MIT1002_00759 0.72 -2.1
836,057 - -3.0
836,057 - -2.2
836,084 - -1.8
836,092 + -0.5
836,100 - -3.2
836,249 - MIT1002_00760 0.33 -3.1
836,256 + MIT1002_00760 0.35 -2.6
836,363 + MIT1002_00760 0.61 -2.1
836,382 - MIT1002_00760 0.66 -3.0
836,404 + MIT1002_00760 0.71 +0.2
836,515 - -2.8
836,576 - -4.1
836,632 + MIT1002_00761 0.18 -2.9
836,661 + MIT1002_00761 0.22 -3.3
836,669 - MIT1002_00761 0.24 -2.7
836,726 - MIT1002_00761 0.33 -1.2
836,749 + MIT1002_00761 0.37 -0.7
836,869 - MIT1002_00761 0.56 -3.3
836,930 - MIT1002_00761 0.67 -1.4
836,930 - MIT1002_00761 0.67 -3.6
837,113 - -2.3
837,174 - -1.7
837,195 + -1.7
837,201 + -2.7
837,249 + -2.5
837,270 - -1.0
837,274 - -1.8
837,306 + MIT1002_00762 0.12 -3.7
837,343 - MIT1002_00762 0.15 -4.1
837,352 + MIT1002_00762 0.16 -3.0
837,352 + MIT1002_00762 0.16 -1.8
837,418 + MIT1002_00762 0.20 -1.8
837,485 + MIT1002_00762 0.25 -1.2
837,485 + MIT1002_00762 0.25 -2.0
837,503 + MIT1002_00762 0.27 -0.4
837,503 + MIT1002_00762 0.27 -1.0
837,517 + MIT1002_00762 0.28 -1.1

Or see this region's nucleotide sequence