Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00758

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00756 and MIT1002_00757 are separated by 176 nucleotidesMIT1002_00757 and MIT1002_00758 are separated by 13 nucleotidesMIT1002_00758 and MIT1002_00759 are separated by 2 nucleotidesMIT1002_00759 and MIT1002_00760 are separated by 32 nucleotidesMIT1002_00760 and MIT1002_00761 are separated by 3 nucleotides MIT1002_00756: MIT1002_00756 - TonB-dependent receptor, at 830,599 to 833,247 _00756 MIT1002_00757: MIT1002_00757 - hypothetical protein, at 833,424 to 834,182 _00757 MIT1002_00758: MIT1002_00758 - Biopolymer transport protein ExbB, at 834,196 to 835,560 _00758 MIT1002_00759: MIT1002_00759 - protein TolQ, at 835,563 to 836,081 _00759 MIT1002_00760: MIT1002_00760 - Biopolymer transport protein ExbD, at 836,114 to 836,521 _00760 MIT1002_00761: MIT1002_00761 - transport protein TonB, at 836,525 to 837,133 _00761 Position (kb) 834 835 836Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 833.208 kb on + strandat 833.208 kb on + strandat 833.215 kb on + strandat 833.215 kb on - strandat 833.216 kb on + strandat 833.223 kb on - strandat 833.223 kb on - strandat 833.223 kb on - strandat 833.224 kb on - strandat 833.241 kb on + strandat 833.249 kb on + strandat 833.268 kb on + strandat 833.413 kb on + strandat 833.422 kb on + strandat 833.439 kb on + strandat 833.534 kb on + strand, within MIT1002_00757at 833.561 kb on + strand, within MIT1002_00757at 833.569 kb on + strand, within MIT1002_00757at 833.601 kb on - strand, within MIT1002_00757at 833.603 kb on - strand, within MIT1002_00757at 833.611 kb on - strand, within MIT1002_00757at 833.611 kb on - strand, within MIT1002_00757at 833.632 kb on + strand, within MIT1002_00757at 833.632 kb on + strand, within MIT1002_00757at 833.632 kb on + strand, within MIT1002_00757at 833.640 kb on - strand, within MIT1002_00757at 833.640 kb on - strand, within MIT1002_00757at 833.640 kb on - strand, within MIT1002_00757at 833.647 kb on - strand, within MIT1002_00757at 833.722 kb on + strand, within MIT1002_00757at 833.727 kb on - strand, within MIT1002_00757at 833.746 kb on + strand, within MIT1002_00757at 833.756 kb on - strand, within MIT1002_00757at 833.770 kb on + strand, within MIT1002_00757at 833.770 kb on + strand, within MIT1002_00757at 833.770 kb on + strand, within MIT1002_00757at 833.778 kb on - strand, within MIT1002_00757at 833.780 kb on - strand, within MIT1002_00757at 833.783 kb on - strand, within MIT1002_00757at 833.845 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.855 kb on - strand, within MIT1002_00757at 833.857 kb on + strand, within MIT1002_00757at 833.898 kb on - strand, within MIT1002_00757at 833.934 kb on + strand, within MIT1002_00757at 833.940 kb on - strand, within MIT1002_00757at 833.942 kb on - strand, within MIT1002_00757at 834.017 kb on - strand, within MIT1002_00757at 834.038 kb on + strand, within MIT1002_00757at 834.078 kb on + strand, within MIT1002_00757at 834.177 kb on + strandat 834.206 kb on - strandat 834.226 kb on + strandat 834.283 kb on + strandat 834.374 kb on + strand, within MIT1002_00758at 834.387 kb on - strand, within MIT1002_00758at 834.444 kb on + strand, within MIT1002_00758at 834.444 kb on + strand, within MIT1002_00758at 834.444 kb on + strand, within MIT1002_00758at 834.484 kb on + strand, within MIT1002_00758at 834.486 kb on + strand, within MIT1002_00758at 834.496 kb on + strand, within MIT1002_00758at 834.508 kb on + strand, within MIT1002_00758at 834.508 kb on + strand, within MIT1002_00758at 834.528 kb on - strand, within MIT1002_00758at 834.544 kb on - strand, within MIT1002_00758at 834.582 kb on - strand, within MIT1002_00758at 834.642 kb on - strand, within MIT1002_00758at 834.648 kb on - strand, within MIT1002_00758at 834.738 kb on + strand, within MIT1002_00758at 834.746 kb on - strand, within MIT1002_00758at 834.746 kb on - strand, within MIT1002_00758at 834.785 kb on - strand, within MIT1002_00758at 834.835 kb on + strand, within MIT1002_00758at 834.835 kb on + strand, within MIT1002_00758at 834.843 kb on - strand, within MIT1002_00758at 834.869 kb on - strand, within MIT1002_00758at 834.942 kb on + strand, within MIT1002_00758at 834.950 kb on - strand, within MIT1002_00758at 834.961 kb on - strand, within MIT1002_00758at 834.977 kb on + strand, within MIT1002_00758at 834.985 kb on - strand, within MIT1002_00758at 834.998 kb on + strand, within MIT1002_00758at 834.998 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.010 kb on + strand, within MIT1002_00758at 835.010 kb on + strand, within MIT1002_00758at 835.010 kb on + strand, within MIT1002_00758at 835.015 kb on + strand, within MIT1002_00758at 835.015 kb on + strand, within MIT1002_00758at 835.018 kb on - strand, within MIT1002_00758at 835.018 kb on - strand, within MIT1002_00758at 835.028 kb on - strand, within MIT1002_00758at 835.076 kb on + strand, within MIT1002_00758at 835.117 kb on - strand, within MIT1002_00758at 835.134 kb on + strand, within MIT1002_00758at 835.316 kb on - strand, within MIT1002_00758at 835.341 kb on + strand, within MIT1002_00758at 835.341 kb on + strand, within MIT1002_00758at 835.349 kb on - strand, within MIT1002_00758at 835.349 kb on - strand, within MIT1002_00758at 835.376 kb on - strand, within MIT1002_00758at 835.376 kb on - strand, within MIT1002_00758at 835.437 kb on - strandat 835.464 kb on + strandat 835.472 kb on - strandat 835.472 kb on - strandat 835.472 kb on - strandat 835.472 kb on - strandat 835.476 kb on + strandat 835.477 kb on - strandat 835.477 kb on - strandat 835.485 kb on - strandat 835.509 kb on - strandat 835.555 kb on + strandat 835.562 kb on - strandat 835.614 kb on + strandat 835.630 kb on - strand, within MIT1002_00759at 835.659 kb on + strand, within MIT1002_00759at 835.734 kb on - strand, within MIT1002_00759at 835.865 kb on - strand, within MIT1002_00759at 835.922 kb on - strand, within MIT1002_00759at 835.928 kb on - strand, within MIT1002_00759at 835.937 kb on + strand, within MIT1002_00759at 836.057 kb on - strandat 836.057 kb on - strandat 836.084 kb on - strandat 836.092 kb on + strandat 836.100 kb on - strandat 836.249 kb on - strand, within MIT1002_00760at 836.256 kb on + strand, within MIT1002_00760at 836.363 kb on + strand, within MIT1002_00760at 836.382 kb on - strand, within MIT1002_00760at 836.404 kb on + strand, within MIT1002_00760at 836.515 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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833,208 + -0.7
833,208 + -1.2
833,215 + -2.5
833,215 - -2.1
833,216 + -2.4
833,223 - +0.1
833,223 - -1.7
833,223 - -3.7
833,224 - -3.7
833,241 + +1.1
833,249 + +2.0
833,268 + +1.9
833,413 + -1.1
833,422 + -3.3
833,439 + -3.5
833,534 + MIT1002_00757 0.14 -2.2
833,561 + MIT1002_00757 0.18 -2.2
833,569 + MIT1002_00757 0.19 -1.7
833,601 - MIT1002_00757 0.23 -4.4
833,603 - MIT1002_00757 0.24 -1.7
833,611 - MIT1002_00757 0.25 -2.1
833,611 - MIT1002_00757 0.25 +0.3
833,632 + MIT1002_00757 0.27 -2.7
833,632 + MIT1002_00757 0.27 -1.4
833,632 + MIT1002_00757 0.27 -1.5
833,640 - MIT1002_00757 0.28 -2.3
833,640 - MIT1002_00757 0.28 -1.1
833,640 - MIT1002_00757 0.28 -2.2
833,647 - MIT1002_00757 0.29 -1.4
833,722 + MIT1002_00757 0.39 -1.2
833,727 - MIT1002_00757 0.40 -3.6
833,746 + MIT1002_00757 0.42 -3.6
833,756 - MIT1002_00757 0.44 -1.9
833,770 + MIT1002_00757 0.46 -2.2
833,770 + MIT1002_00757 0.46 -2.9
833,770 + MIT1002_00757 0.46 -1.5
833,778 - MIT1002_00757 0.47 -2.6
833,780 - MIT1002_00757 0.47 -2.0
833,783 - MIT1002_00757 0.47 +0.4
833,845 + MIT1002_00757 0.55 -0.7
833,847 + MIT1002_00757 0.56 -2.5
833,847 + MIT1002_00757 0.56 -4.4
833,847 + MIT1002_00757 0.56 -2.9
833,847 + MIT1002_00757 0.56 -0.7
833,847 + MIT1002_00757 0.56 -2.5
833,855 - MIT1002_00757 0.57 -2.5
833,857 + MIT1002_00757 0.57 -3.3
833,898 - MIT1002_00757 0.62 -1.7
833,934 + MIT1002_00757 0.67 -3.1
833,940 - MIT1002_00757 0.68 -3.7
833,942 - MIT1002_00757 0.68 -2.8
834,017 - MIT1002_00757 0.78 -1.2
834,038 + MIT1002_00757 0.81 -2.0
834,078 + MIT1002_00757 0.86 -2.1
834,177 + -1.4
834,206 - -1.4
834,226 + -3.0
834,283 + +0.2
834,374 + MIT1002_00758 0.13 -2.7
834,387 - MIT1002_00758 0.14 -2.2
834,444 + MIT1002_00758 0.18 -1.4
834,444 + MIT1002_00758 0.18 -3.9
834,444 + MIT1002_00758 0.18 -3.4
834,484 + MIT1002_00758 0.21 -3.3
834,486 + MIT1002_00758 0.21 -1.8
834,496 + MIT1002_00758 0.22 -1.4
834,508 + MIT1002_00758 0.23 -1.5
834,508 + MIT1002_00758 0.23 -2.0
834,528 - MIT1002_00758 0.24 -3.4
834,544 - MIT1002_00758 0.25 -2.9
834,582 - MIT1002_00758 0.28 -2.2
834,642 - MIT1002_00758 0.33 -2.9
834,648 - MIT1002_00758 0.33 -2.4
834,738 + MIT1002_00758 0.40 -2.8
834,746 - MIT1002_00758 0.40 -1.2
834,746 - MIT1002_00758 0.40 -1.6
834,785 - MIT1002_00758 0.43 -2.5
834,835 + MIT1002_00758 0.47 -2.1
834,835 + MIT1002_00758 0.47 -1.9
834,843 - MIT1002_00758 0.47 -2.2
834,869 - MIT1002_00758 0.49 -2.3
834,942 + MIT1002_00758 0.55 -1.2
834,950 - MIT1002_00758 0.55 -1.9
834,961 - MIT1002_00758 0.56 -2.3
834,977 + MIT1002_00758 0.57 -1.5
834,985 - MIT1002_00758 0.58 -1.1
834,998 + MIT1002_00758 0.59 +0.3
834,998 + MIT1002_00758 0.59 -1.8
835,000 + MIT1002_00758 0.59 -2.6
835,000 + MIT1002_00758 0.59 -0.8
835,000 + MIT1002_00758 0.59 -2.6
835,000 + MIT1002_00758 0.59 -2.7
835,010 + MIT1002_00758 0.60 -4.9
835,010 + MIT1002_00758 0.60 -1.4
835,010 + MIT1002_00758 0.60 -3.1
835,015 + MIT1002_00758 0.60 -3.1
835,015 + MIT1002_00758 0.60 -3.7
835,018 - MIT1002_00758 0.60 +0.6
835,018 - MIT1002_00758 0.60 -3.1
835,028 - MIT1002_00758 0.61 -1.8
835,076 + MIT1002_00758 0.64 -2.1
835,117 - MIT1002_00758 0.67 -4.0
835,134 + MIT1002_00758 0.69 -3.0
835,316 - MIT1002_00758 0.82 -0.7
835,341 + MIT1002_00758 0.84 -3.5
835,341 + MIT1002_00758 0.84 -4.4
835,349 - MIT1002_00758 0.84 -2.5
835,349 - MIT1002_00758 0.84 -2.0
835,376 - MIT1002_00758 0.86 -2.8
835,376 - MIT1002_00758 0.86 -2.8
835,437 - -4.4
835,464 + -2.0
835,472 - -3.4
835,472 - -0.5
835,472 - -2.2
835,472 - +0.6
835,476 + -3.7
835,477 - -4.4
835,477 - -1.6
835,485 - -2.7
835,509 - -2.7
835,555 + -2.5
835,562 - -3.5
835,614 + -6.5
835,630 - MIT1002_00759 0.13 -3.4
835,659 + MIT1002_00759 0.18 -1.8
835,734 - MIT1002_00759 0.33 -2.8
835,865 - MIT1002_00759 0.58 -4.1
835,922 - MIT1002_00759 0.69 -2.3
835,928 - MIT1002_00759 0.70 -1.8
835,937 + MIT1002_00759 0.72 -2.1
836,057 - -3.0
836,057 - -2.2
836,084 - -1.8
836,092 + -0.5
836,100 - -3.2
836,249 - MIT1002_00760 0.33 -3.1
836,256 + MIT1002_00760 0.35 -2.6
836,363 + MIT1002_00760 0.61 -2.1
836,382 - MIT1002_00760 0.66 -3.0
836,404 + MIT1002_00760 0.71 +0.2
836,515 - -2.8

Or see this region's nucleotide sequence