Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00757

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00756 and MIT1002_00757 are separated by 176 nucleotidesMIT1002_00757 and MIT1002_00758 are separated by 13 nucleotides MIT1002_00756: MIT1002_00756 - TonB-dependent receptor, at 830,599 to 833,247 _00756 MIT1002_00757: MIT1002_00757 - hypothetical protein, at 833,424 to 834,182 _00757 MIT1002_00758: MIT1002_00758 - Biopolymer transport protein ExbB, at 834,196 to 835,560 _00758 Position (kb) 833 834 835Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 832.431 kb on + strand, within MIT1002_00756at 832.461 kb on + strand, within MIT1002_00756at 832.497 kb on - strand, within MIT1002_00756at 832.560 kb on + strand, within MIT1002_00756at 832.573 kb on - strand, within MIT1002_00756at 832.573 kb on - strand, within MIT1002_00756at 832.578 kb on - strand, within MIT1002_00756at 832.578 kb on - strand, within MIT1002_00756at 832.578 kb on - strand, within MIT1002_00756at 832.630 kb on + strand, within MIT1002_00756at 832.635 kb on - strand, within MIT1002_00756at 832.663 kb on + strand, within MIT1002_00756at 832.695 kb on - strand, within MIT1002_00756at 832.699 kb on + strand, within MIT1002_00756at 832.699 kb on + strand, within MIT1002_00756at 832.699 kb on + strand, within MIT1002_00756at 832.699 kb on + strand, within MIT1002_00756at 832.700 kb on - strand, within MIT1002_00756at 832.702 kb on - strand, within MIT1002_00756at 832.707 kb on - strand, within MIT1002_00756at 832.707 kb on - strand, within MIT1002_00756at 832.749 kb on + strand, within MIT1002_00756at 832.749 kb on + strand, within MIT1002_00756at 832.749 kb on + strand, within MIT1002_00756at 832.749 kb on + strand, within MIT1002_00756at 832.749 kb on + strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.757 kb on - strand, within MIT1002_00756at 832.788 kb on - strand, within MIT1002_00756at 832.804 kb on + strand, within MIT1002_00756at 832.832 kb on + strand, within MIT1002_00756at 832.925 kb on + strand, within MIT1002_00756at 832.925 kb on + strand, within MIT1002_00756at 832.942 kb on + strand, within MIT1002_00756at 833.079 kb on + strandat 833.103 kb on - strandat 833.105 kb on - strandat 833.163 kb on - strandat 833.190 kb on + strandat 833.208 kb on + strandat 833.208 kb on + strandat 833.215 kb on + strandat 833.215 kb on - strandat 833.216 kb on + strandat 833.223 kb on - strandat 833.223 kb on - strandat 833.223 kb on - strandat 833.224 kb on - strandat 833.241 kb on + strandat 833.249 kb on + strandat 833.268 kb on + strandat 833.413 kb on + strandat 833.422 kb on + strandat 833.439 kb on + strandat 833.534 kb on + strand, within MIT1002_00757at 833.561 kb on + strand, within MIT1002_00757at 833.569 kb on + strand, within MIT1002_00757at 833.601 kb on - strand, within MIT1002_00757at 833.603 kb on - strand, within MIT1002_00757at 833.611 kb on - strand, within MIT1002_00757at 833.611 kb on - strand, within MIT1002_00757at 833.632 kb on + strand, within MIT1002_00757at 833.632 kb on + strand, within MIT1002_00757at 833.632 kb on + strand, within MIT1002_00757at 833.640 kb on - strand, within MIT1002_00757at 833.640 kb on - strand, within MIT1002_00757at 833.640 kb on - strand, within MIT1002_00757at 833.647 kb on - strand, within MIT1002_00757at 833.722 kb on + strand, within MIT1002_00757at 833.727 kb on - strand, within MIT1002_00757at 833.746 kb on + strand, within MIT1002_00757at 833.756 kb on - strand, within MIT1002_00757at 833.770 kb on + strand, within MIT1002_00757at 833.770 kb on + strand, within MIT1002_00757at 833.770 kb on + strand, within MIT1002_00757at 833.778 kb on - strand, within MIT1002_00757at 833.780 kb on - strand, within MIT1002_00757at 833.783 kb on - strand, within MIT1002_00757at 833.845 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.847 kb on + strand, within MIT1002_00757at 833.855 kb on - strand, within MIT1002_00757at 833.857 kb on + strand, within MIT1002_00757at 833.898 kb on - strand, within MIT1002_00757at 833.934 kb on + strand, within MIT1002_00757at 833.940 kb on - strand, within MIT1002_00757at 833.942 kb on - strand, within MIT1002_00757at 834.017 kb on - strand, within MIT1002_00757at 834.038 kb on + strand, within MIT1002_00757at 834.078 kb on + strand, within MIT1002_00757at 834.177 kb on + strandat 834.206 kb on - strandat 834.226 kb on + strandat 834.283 kb on + strandat 834.374 kb on + strand, within MIT1002_00758at 834.387 kb on - strand, within MIT1002_00758at 834.444 kb on + strand, within MIT1002_00758at 834.444 kb on + strand, within MIT1002_00758at 834.444 kb on + strand, within MIT1002_00758at 834.484 kb on + strand, within MIT1002_00758at 834.486 kb on + strand, within MIT1002_00758at 834.496 kb on + strand, within MIT1002_00758at 834.508 kb on + strand, within MIT1002_00758at 834.508 kb on + strand, within MIT1002_00758at 834.528 kb on - strand, within MIT1002_00758at 834.544 kb on - strand, within MIT1002_00758at 834.582 kb on - strand, within MIT1002_00758at 834.642 kb on - strand, within MIT1002_00758at 834.648 kb on - strand, within MIT1002_00758at 834.738 kb on + strand, within MIT1002_00758at 834.746 kb on - strand, within MIT1002_00758at 834.746 kb on - strand, within MIT1002_00758at 834.785 kb on - strand, within MIT1002_00758at 834.835 kb on + strand, within MIT1002_00758at 834.835 kb on + strand, within MIT1002_00758at 834.843 kb on - strand, within MIT1002_00758at 834.869 kb on - strand, within MIT1002_00758at 834.942 kb on + strand, within MIT1002_00758at 834.950 kb on - strand, within MIT1002_00758at 834.961 kb on - strand, within MIT1002_00758at 834.977 kb on + strand, within MIT1002_00758at 834.985 kb on - strand, within MIT1002_00758at 834.998 kb on + strand, within MIT1002_00758at 834.998 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.000 kb on + strand, within MIT1002_00758at 835.010 kb on + strand, within MIT1002_00758at 835.010 kb on + strand, within MIT1002_00758at 835.010 kb on + strand, within MIT1002_00758at 835.015 kb on + strand, within MIT1002_00758at 835.015 kb on + strand, within MIT1002_00758at 835.018 kb on - strand, within MIT1002_00758at 835.018 kb on - strand, within MIT1002_00758at 835.028 kb on - strand, within MIT1002_00758at 835.076 kb on + strand, within MIT1002_00758at 835.117 kb on - strand, within MIT1002_00758at 835.134 kb on + strand, within MIT1002_00758

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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832,431 + MIT1002_00756 0.69 -4.5
832,461 + MIT1002_00756 0.70 +0.2
832,497 - MIT1002_00756 0.72 -3.3
832,560 + MIT1002_00756 0.74 -1.8
832,573 - MIT1002_00756 0.75 -3.1
832,573 - MIT1002_00756 0.75 -2.0
832,578 - MIT1002_00756 0.75 -1.9
832,578 - MIT1002_00756 0.75 -2.4
832,578 - MIT1002_00756 0.75 -0.5
832,630 + MIT1002_00756 0.77 -3.2
832,635 - MIT1002_00756 0.77 -3.4
832,663 + MIT1002_00756 0.78 -1.8
832,695 - MIT1002_00756 0.79 -0.7
832,699 + MIT1002_00756 0.79 -3.4
832,699 + MIT1002_00756 0.79 -2.1
832,699 + MIT1002_00756 0.79 -0.4
832,699 + MIT1002_00756 0.79 -2.7
832,700 - MIT1002_00756 0.79 -3.8
832,702 - MIT1002_00756 0.79 -1.3
832,707 - MIT1002_00756 0.80 -1.8
832,707 - MIT1002_00756 0.80 -1.9
832,749 + MIT1002_00756 0.81 -1.6
832,749 + MIT1002_00756 0.81 -2.5
832,749 + MIT1002_00756 0.81 -2.0
832,749 + MIT1002_00756 0.81 -1.9
832,749 + MIT1002_00756 0.81 -3.5
832,757 - MIT1002_00756 0.81 -1.0
832,757 - MIT1002_00756 0.81 -3.5
832,757 - MIT1002_00756 0.81 -1.6
832,757 - MIT1002_00756 0.81 -1.6
832,757 - MIT1002_00756 0.81 +0.2
832,757 - MIT1002_00756 0.81 -2.3
832,788 - MIT1002_00756 0.83 -2.6
832,804 + MIT1002_00756 0.83 -2.9
832,832 + MIT1002_00756 0.84 -3.0
832,925 + MIT1002_00756 0.88 -1.4
832,925 + MIT1002_00756 0.88 -1.7
832,942 + MIT1002_00756 0.88 -1.4
833,079 + -4.3
833,103 - -1.7
833,105 - -3.0
833,163 - -2.9
833,190 + -2.1
833,208 + -0.7
833,208 + -1.2
833,215 + -2.5
833,215 - -2.1
833,216 + -2.4
833,223 - +0.1
833,223 - -1.7
833,223 - -3.7
833,224 - -3.7
833,241 + +1.1
833,249 + +2.0
833,268 + +1.9
833,413 + -1.1
833,422 + -3.3
833,439 + -3.5
833,534 + MIT1002_00757 0.14 -2.2
833,561 + MIT1002_00757 0.18 -2.2
833,569 + MIT1002_00757 0.19 -1.7
833,601 - MIT1002_00757 0.23 -4.4
833,603 - MIT1002_00757 0.24 -1.7
833,611 - MIT1002_00757 0.25 -2.1
833,611 - MIT1002_00757 0.25 +0.3
833,632 + MIT1002_00757 0.27 -2.7
833,632 + MIT1002_00757 0.27 -1.4
833,632 + MIT1002_00757 0.27 -1.5
833,640 - MIT1002_00757 0.28 -2.3
833,640 - MIT1002_00757 0.28 -1.1
833,640 - MIT1002_00757 0.28 -2.2
833,647 - MIT1002_00757 0.29 -1.4
833,722 + MIT1002_00757 0.39 -1.2
833,727 - MIT1002_00757 0.40 -3.6
833,746 + MIT1002_00757 0.42 -3.6
833,756 - MIT1002_00757 0.44 -1.9
833,770 + MIT1002_00757 0.46 -2.2
833,770 + MIT1002_00757 0.46 -2.9
833,770 + MIT1002_00757 0.46 -1.5
833,778 - MIT1002_00757 0.47 -2.6
833,780 - MIT1002_00757 0.47 -2.0
833,783 - MIT1002_00757 0.47 +0.4
833,845 + MIT1002_00757 0.55 -0.7
833,847 + MIT1002_00757 0.56 -2.5
833,847 + MIT1002_00757 0.56 -4.4
833,847 + MIT1002_00757 0.56 -2.9
833,847 + MIT1002_00757 0.56 -0.7
833,847 + MIT1002_00757 0.56 -2.5
833,855 - MIT1002_00757 0.57 -2.5
833,857 + MIT1002_00757 0.57 -3.3
833,898 - MIT1002_00757 0.62 -1.7
833,934 + MIT1002_00757 0.67 -3.1
833,940 - MIT1002_00757 0.68 -3.7
833,942 - MIT1002_00757 0.68 -2.8
834,017 - MIT1002_00757 0.78 -1.2
834,038 + MIT1002_00757 0.81 -2.0
834,078 + MIT1002_00757 0.86 -2.1
834,177 + -1.4
834,206 - -1.4
834,226 + -3.0
834,283 + +0.2
834,374 + MIT1002_00758 0.13 -2.7
834,387 - MIT1002_00758 0.14 -2.2
834,444 + MIT1002_00758 0.18 -1.4
834,444 + MIT1002_00758 0.18 -3.9
834,444 + MIT1002_00758 0.18 -3.4
834,484 + MIT1002_00758 0.21 -3.3
834,486 + MIT1002_00758 0.21 -1.8
834,496 + MIT1002_00758 0.22 -1.4
834,508 + MIT1002_00758 0.23 -1.5
834,508 + MIT1002_00758 0.23 -2.0
834,528 - MIT1002_00758 0.24 -3.4
834,544 - MIT1002_00758 0.25 -2.9
834,582 - MIT1002_00758 0.28 -2.2
834,642 - MIT1002_00758 0.33 -2.9
834,648 - MIT1002_00758 0.33 -2.4
834,738 + MIT1002_00758 0.40 -2.8
834,746 - MIT1002_00758 0.40 -1.2
834,746 - MIT1002_00758 0.40 -1.6
834,785 - MIT1002_00758 0.43 -2.5
834,835 + MIT1002_00758 0.47 -2.1
834,835 + MIT1002_00758 0.47 -1.9
834,843 - MIT1002_00758 0.47 -2.2
834,869 - MIT1002_00758 0.49 -2.3
834,942 + MIT1002_00758 0.55 -1.2
834,950 - MIT1002_00758 0.55 -1.9
834,961 - MIT1002_00758 0.56 -2.3
834,977 + MIT1002_00758 0.57 -1.5
834,985 - MIT1002_00758 0.58 -1.1
834,998 + MIT1002_00758 0.59 +0.3
834,998 + MIT1002_00758 0.59 -1.8
835,000 + MIT1002_00758 0.59 -2.6
835,000 + MIT1002_00758 0.59 -0.8
835,000 + MIT1002_00758 0.59 -2.6
835,000 + MIT1002_00758 0.59 -2.7
835,010 + MIT1002_00758 0.60 -4.9
835,010 + MIT1002_00758 0.60 -1.4
835,010 + MIT1002_00758 0.60 -3.1
835,015 + MIT1002_00758 0.60 -3.1
835,015 + MIT1002_00758 0.60 -3.7
835,018 - MIT1002_00758 0.60 +0.6
835,018 - MIT1002_00758 0.60 -3.1
835,028 - MIT1002_00758 0.61 -1.8
835,076 + MIT1002_00758 0.64 -2.1
835,117 - MIT1002_00758 0.67 -4.0
835,134 + MIT1002_00758 0.69 -3.0

Or see this region's nucleotide sequence