Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00729

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00728 and MIT1002_00729 are separated by 13 nucleotidesMIT1002_00729 and MIT1002_00730 are separated by 530 nucleotidesMIT1002_00730 and MIT1002_00731 are separated by 34 nucleotides MIT1002_00728: MIT1002_00728 - Multidrug transporter MdtA, at 796,170 to 797,219 _00728 MIT1002_00729: MIT1002_00729 - putative efflux pump membrane transporter TtgB, at 797,233 to 800,340 _00729 MIT1002_00730: MIT1002_00730 - phosphate binding protein, at 800,871 to 801,275 _00730 MIT1002_00731: MIT1002_00731 - hypothetical protein, at 801,310 to 802,509 _00731 Position (kb) 797 798 799 800 801Strain fitness (log2 ratio) -2 -1 0 1 2at 796.233 kb on - strandat 796.270 kb on + strandat 796.397 kb on - strand, within MIT1002_00728at 796.486 kb on + strand, within MIT1002_00728at 796.486 kb on + strand, within MIT1002_00728at 796.486 kb on + strand, within MIT1002_00728at 796.507 kb on + strand, within MIT1002_00728at 796.564 kb on - strand, within MIT1002_00728at 796.578 kb on - strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.630 kb on - strand, within MIT1002_00728at 796.632 kb on + strand, within MIT1002_00728at 796.680 kb on + strand, within MIT1002_00728at 796.751 kb on + strand, within MIT1002_00728at 796.754 kb on - strand, within MIT1002_00728at 796.763 kb on - strand, within MIT1002_00728at 796.782 kb on + strand, within MIT1002_00728at 796.838 kb on + strand, within MIT1002_00728at 796.838 kb on + strand, within MIT1002_00728at 796.846 kb on - strand, within MIT1002_00728at 796.846 kb on - strand, within MIT1002_00728at 796.909 kb on + strand, within MIT1002_00728at 796.911 kb on + strand, within MIT1002_00728at 796.911 kb on + strand, within MIT1002_00728at 796.917 kb on - strand, within MIT1002_00728at 796.919 kb on - strand, within MIT1002_00728at 796.936 kb on + strand, within MIT1002_00728at 796.940 kb on + strand, within MIT1002_00728at 796.957 kb on + strand, within MIT1002_00728at 797.087 kb on - strand, within MIT1002_00728at 797.118 kb on - strandat 797.137 kb on + strandat 797.142 kb on + strandat 797.173 kb on + strandat 797.173 kb on + strandat 797.173 kb on + strandat 797.181 kb on - strandat 797.181 kb on - strandat 797.201 kb on - strandat 797.323 kb on + strandat 797.383 kb on - strandat 797.392 kb on - strandat 797.435 kb on - strandat 797.450 kb on + strandat 797.476 kb on - strandat 797.491 kb on - strandat 797.571 kb on - strand, within MIT1002_00729at 797.578 kb on + strand, within MIT1002_00729at 797.606 kb on + strand, within MIT1002_00729at 797.614 kb on - strand, within MIT1002_00729at 797.614 kb on - strand, within MIT1002_00729at 797.655 kb on - strand, within MIT1002_00729at 797.681 kb on + strand, within MIT1002_00729at 797.681 kb on - strand, within MIT1002_00729at 797.767 kb on + strand, within MIT1002_00729at 797.767 kb on + strand, within MIT1002_00729at 797.858 kb on - strand, within MIT1002_00729at 797.930 kb on + strand, within MIT1002_00729at 797.938 kb on - strand, within MIT1002_00729at 797.971 kb on - strand, within MIT1002_00729at 798.026 kb on + strand, within MIT1002_00729at 798.096 kb on + strand, within MIT1002_00729at 798.104 kb on - strand, within MIT1002_00729at 798.104 kb on - strand, within MIT1002_00729at 798.110 kb on + strand, within MIT1002_00729at 798.110 kb on + strand, within MIT1002_00729at 798.118 kb on - strand, within MIT1002_00729at 798.118 kb on - strand, within MIT1002_00729at 798.144 kb on - strand, within MIT1002_00729at 798.199 kb on - strand, within MIT1002_00729at 798.232 kb on + strand, within MIT1002_00729at 798.242 kb on - strand, within MIT1002_00729at 798.355 kb on + strand, within MIT1002_00729at 798.370 kb on - strand, within MIT1002_00729at 798.389 kb on + strand, within MIT1002_00729at 798.556 kb on - strand, within MIT1002_00729at 798.561 kb on - strand, within MIT1002_00729at 798.627 kb on + strand, within MIT1002_00729at 798.648 kb on - strand, within MIT1002_00729at 798.665 kb on + strand, within MIT1002_00729at 798.742 kb on + strand, within MIT1002_00729at 798.818 kb on + strand, within MIT1002_00729at 798.845 kb on + strand, within MIT1002_00729at 799.120 kb on + strand, within MIT1002_00729at 799.120 kb on + strand, within MIT1002_00729at 799.128 kb on - strand, within MIT1002_00729at 799.137 kb on + strand, within MIT1002_00729at 799.143 kb on - strand, within MIT1002_00729at 799.198 kb on + strand, within MIT1002_00729at 799.198 kb on + strand, within MIT1002_00729at 799.198 kb on + strand, within MIT1002_00729at 799.206 kb on - strand, within MIT1002_00729at 799.206 kb on - strand, within MIT1002_00729at 799.206 kb on - strand, within MIT1002_00729at 799.216 kb on - strand, within MIT1002_00729at 799.221 kb on - strand, within MIT1002_00729at 799.290 kb on + strand, within MIT1002_00729at 799.292 kb on + strand, within MIT1002_00729at 799.293 kb on - strand, within MIT1002_00729at 799.439 kb on - strand, within MIT1002_00729at 799.487 kb on + strand, within MIT1002_00729at 799.508 kb on + strand, within MIT1002_00729at 799.509 kb on + strand, within MIT1002_00729at 799.547 kb on + strand, within MIT1002_00729at 799.547 kb on + strand, within MIT1002_00729at 799.596 kb on + strand, within MIT1002_00729at 799.596 kb on + strand, within MIT1002_00729at 799.667 kb on + strand, within MIT1002_00729at 799.667 kb on + strand, within MIT1002_00729at 799.667 kb on + strand, within MIT1002_00729at 799.667 kb on + strand, within MIT1002_00729at 799.675 kb on - strand, within MIT1002_00729at 799.712 kb on + strand, within MIT1002_00729at 799.712 kb on + strand, within MIT1002_00729at 799.712 kb on + strand, within MIT1002_00729at 799.712 kb on + strand, within MIT1002_00729at 799.712 kb on + strand, within MIT1002_00729at 799.712 kb on + strand, within MIT1002_00729at 799.720 kb on - strand, within MIT1002_00729at 799.720 kb on - strand, within MIT1002_00729at 799.720 kb on - strand, within MIT1002_00729at 799.720 kb on - strand, within MIT1002_00729at 799.722 kb on + strand, within MIT1002_00729at 799.784 kb on - strand, within MIT1002_00729at 799.910 kb on - strand, within MIT1002_00729at 800.078 kb on + strandat 800.078 kb on + strandat 800.220 kb on + strandat 800.246 kb on - strandat 800.310 kb on + strandat 800.350 kb on + strandat 800.358 kb on - strandat 800.365 kb on - strandat 800.424 kb on + strandat 800.618 kb on + strandat 800.626 kb on - strandat 800.626 kb on - strandat 800.626 kb on - strandat 800.629 kb on + strandat 800.629 kb on + strandat 800.637 kb on - strandat 800.637 kb on - strandat 800.637 kb on - strandat 800.732 kb on - strandat 800.851 kb on - strandat 800.863 kb on - strandat 800.865 kb on - strandat 800.903 kb on - strandat 801.045 kb on + strand, within MIT1002_00730at 801.092 kb on - strand, within MIT1002_00730at 801.092 kb on - strand, within MIT1002_00730at 801.156 kb on - strand, within MIT1002_00730at 801.165 kb on - strand, within MIT1002_00730at 801.175 kb on + strand, within MIT1002_00730at 801.233 kb on - strand, within MIT1002_00730at 801.240 kb on + strandat 801.240 kb on + strandat 801.246 kb on - strandat 801.248 kb on - strandat 801.248 kb on - strandat 801.250 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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796,233 - +0.4
796,270 + -0.2
796,397 - MIT1002_00728 0.22 +1.4
796,486 + MIT1002_00728 0.30 +1.5
796,486 + MIT1002_00728 0.30 -0.5
796,486 + MIT1002_00728 0.30 +1.4
796,507 + MIT1002_00728 0.32 -0.2
796,564 - MIT1002_00728 0.38 +0.1
796,578 - MIT1002_00728 0.39 -0.6
796,601 + MIT1002_00728 0.41 -1.3
796,601 + MIT1002_00728 0.41 +2.2
796,601 + MIT1002_00728 0.41 +0.9
796,601 + MIT1002_00728 0.41 -0.8
796,601 + MIT1002_00728 0.41 -0.7
796,609 - MIT1002_00728 0.42 -1.6
796,609 - MIT1002_00728 0.42 -0.3
796,609 - MIT1002_00728 0.42 +1.4
796,609 - MIT1002_00728 0.42 +0.8
796,630 - MIT1002_00728 0.44 +0.2
796,632 + MIT1002_00728 0.44 +0.6
796,680 + MIT1002_00728 0.49 +0.1
796,751 + MIT1002_00728 0.55 +0.1
796,754 - MIT1002_00728 0.56 +0.6
796,763 - MIT1002_00728 0.56 +1.5
796,782 + MIT1002_00728 0.58 +0.7
796,838 + MIT1002_00728 0.64 +0.2
796,838 + MIT1002_00728 0.64 -0.2
796,846 - MIT1002_00728 0.64 +1.2
796,846 - MIT1002_00728 0.64 +1.1
796,909 + MIT1002_00728 0.70 -1.8
796,911 + MIT1002_00728 0.71 -0.2
796,911 + MIT1002_00728 0.71 -0.1
796,917 - MIT1002_00728 0.71 +1.2
796,919 - MIT1002_00728 0.71 -0.2
796,936 + MIT1002_00728 0.73 +0.4
796,940 + MIT1002_00728 0.73 +2.0
796,957 + MIT1002_00728 0.75 -0.3
797,087 - MIT1002_00728 0.87 -0.4
797,118 - -0.1
797,137 + +0.9
797,142 + +1.3
797,173 + +0.4
797,173 + +0.3
797,173 + +0.7
797,181 - +1.1
797,181 - -0.6
797,201 - -1.1
797,323 + -0.5
797,383 - -0.7
797,392 - +0.6
797,435 - -0.0
797,450 + -0.6
797,476 - -1.1
797,491 - -0.2
797,571 - MIT1002_00729 0.11 -1.0
797,578 + MIT1002_00729 0.11 -0.4
797,606 + MIT1002_00729 0.12 +2.2
797,614 - MIT1002_00729 0.12 -0.7
797,614 - MIT1002_00729 0.12 +1.1
797,655 - MIT1002_00729 0.14 -0.9
797,681 + MIT1002_00729 0.14 -1.1
797,681 - MIT1002_00729 0.14 +1.1
797,767 + MIT1002_00729 0.17 +0.5
797,767 + MIT1002_00729 0.17 +0.2
797,858 - MIT1002_00729 0.20 +1.6
797,930 + MIT1002_00729 0.22 +0.4
797,938 - MIT1002_00729 0.23 +0.5
797,971 - MIT1002_00729 0.24 -0.5
798,026 + MIT1002_00729 0.26 -0.3
798,096 + MIT1002_00729 0.28 +0.1
798,104 - MIT1002_00729 0.28 -1.1
798,104 - MIT1002_00729 0.28 -1.4
798,110 + MIT1002_00729 0.28 +0.7
798,110 + MIT1002_00729 0.28 -1.4
798,118 - MIT1002_00729 0.28 +0.3
798,118 - MIT1002_00729 0.28 -0.5
798,144 - MIT1002_00729 0.29 +0.7
798,199 - MIT1002_00729 0.31 +1.0
798,232 + MIT1002_00729 0.32 +0.1
798,242 - MIT1002_00729 0.32 +1.1
798,355 + MIT1002_00729 0.36 -1.1
798,370 - MIT1002_00729 0.37 -0.8
798,389 + MIT1002_00729 0.37 +1.1
798,556 - MIT1002_00729 0.43 -0.1
798,561 - MIT1002_00729 0.43 -0.0
798,627 + MIT1002_00729 0.45 +1.1
798,648 - MIT1002_00729 0.46 -1.0
798,665 + MIT1002_00729 0.46 -0.3
798,742 + MIT1002_00729 0.49 +0.7
798,818 + MIT1002_00729 0.51 -0.0
798,845 + MIT1002_00729 0.52 -0.4
799,120 + MIT1002_00729 0.61 -0.4
799,120 + MIT1002_00729 0.61 +1.9
799,128 - MIT1002_00729 0.61 +0.5
799,137 + MIT1002_00729 0.61 -0.4
799,143 - MIT1002_00729 0.61 -0.8
799,198 + MIT1002_00729 0.63 +0.9
799,198 + MIT1002_00729 0.63 -0.5
799,198 + MIT1002_00729 0.63 +2.3
799,206 - MIT1002_00729 0.63 +2.1
799,206 - MIT1002_00729 0.63 -0.2
799,206 - MIT1002_00729 0.63 -1.3
799,216 - MIT1002_00729 0.64 +0.5
799,221 - MIT1002_00729 0.64 +0.1
799,290 + MIT1002_00729 0.66 +0.3
799,292 + MIT1002_00729 0.66 +0.2
799,293 - MIT1002_00729 0.66 -0.2
799,439 - MIT1002_00729 0.71 +0.4
799,487 + MIT1002_00729 0.73 +0.2
799,508 + MIT1002_00729 0.73 -1.2
799,509 + MIT1002_00729 0.73 +0.7
799,547 + MIT1002_00729 0.74 +0.2
799,547 + MIT1002_00729 0.74 -0.0
799,596 + MIT1002_00729 0.76 +1.3
799,596 + MIT1002_00729 0.76 +0.7
799,667 + MIT1002_00729 0.78 +1.5
799,667 + MIT1002_00729 0.78 +2.1
799,667 + MIT1002_00729 0.78 +0.8
799,667 + MIT1002_00729 0.78 -0.6
799,675 - MIT1002_00729 0.79 +0.8
799,712 + MIT1002_00729 0.80 +0.2
799,712 + MIT1002_00729 0.80 +1.4
799,712 + MIT1002_00729 0.80 +0.2
799,712 + MIT1002_00729 0.80 +1.5
799,712 + MIT1002_00729 0.80 +0.4
799,712 + MIT1002_00729 0.80 +0.1
799,720 - MIT1002_00729 0.80 +1.0
799,720 - MIT1002_00729 0.80 -0.6
799,720 - MIT1002_00729 0.80 +2.1
799,720 - MIT1002_00729 0.80 -0.7
799,722 + MIT1002_00729 0.80 -1.3
799,784 - MIT1002_00729 0.82 +0.6
799,910 - MIT1002_00729 0.86 +0.3
800,078 + +0.9
800,078 + -0.1
800,220 + +0.3
800,246 - -1.1
800,310 + -0.2
800,350 + -0.4
800,358 - -0.3
800,365 - +0.4
800,424 + +0.1
800,618 + +0.5
800,626 - +0.2
800,626 - -1.6
800,626 - -0.4
800,629 + +0.1
800,629 + -0.5
800,637 - +0.4
800,637 - +0.9
800,637 - -1.9
800,732 - +0.7
800,851 - -0.4
800,863 - -1.4
800,865 - -0.2
800,903 - -0.3
801,045 + MIT1002_00730 0.43 +0.2
801,092 - MIT1002_00730 0.55 +1.0
801,092 - MIT1002_00730 0.55 -0.7
801,156 - MIT1002_00730 0.70 -0.5
801,165 - MIT1002_00730 0.73 -1.3
801,175 + MIT1002_00730 0.75 -0.7
801,233 - MIT1002_00730 0.89 -0.3
801,240 + -0.7
801,240 + -1.6
801,246 - -1.9
801,248 - -1.1
801,248 - +0.6
801,250 + -1.2

Or see this region's nucleotide sequence