Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00719

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00718 and MIT1002_00719 overlap by 4 nucleotidesMIT1002_00719 and MIT1002_00720 are separated by 479 nucleotidesMIT1002_00720 and MIT1002_00721 are separated by 122 nucleotides MIT1002_00718: MIT1002_00718 - serine/threonine protein kinase, at 785,370 to 786,353 _00718 MIT1002_00719: MIT1002_00719 - cytochrome c oxidase accessory protein CcoG, at 786,350 to 787,780 _00719 MIT1002_00720: MIT1002_00720 - hypothetical protein, at 788,260 to 788,631 _00720 MIT1002_00721: MIT1002_00721 - hypothetical protein, at 788,754 to 789,299 _00721 Position (kb) 786 787 788Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 785.394 kb on + strandat 785.394 kb on + strandat 785.402 kb on - strandat 785.409 kb on + strandat 785.451 kb on + strandat 785.471 kb on - strand, within MIT1002_00718at 785.500 kb on - strand, within MIT1002_00718at 785.526 kb on - strand, within MIT1002_00718at 785.538 kb on - strand, within MIT1002_00718at 785.548 kb on + strand, within MIT1002_00718at 785.564 kb on + strand, within MIT1002_00718at 785.709 kb on + strand, within MIT1002_00718at 785.724 kb on + strand, within MIT1002_00718at 785.739 kb on - strand, within MIT1002_00718at 785.778 kb on + strand, within MIT1002_00718at 785.817 kb on - strand, within MIT1002_00718at 785.833 kb on + strand, within MIT1002_00718at 785.833 kb on + strand, within MIT1002_00718at 785.833 kb on + strand, within MIT1002_00718at 785.845 kb on + strand, within MIT1002_00718at 785.859 kb on + strand, within MIT1002_00718at 785.968 kb on + strand, within MIT1002_00718at 785.977 kb on + strand, within MIT1002_00718at 785.987 kb on + strand, within MIT1002_00718at 785.995 kb on - strand, within MIT1002_00718at 786.011 kb on + strand, within MIT1002_00718at 786.019 kb on - strand, within MIT1002_00718at 786.064 kb on + strand, within MIT1002_00718at 786.064 kb on + strand, within MIT1002_00718at 786.064 kb on + strand, within MIT1002_00718at 786.064 kb on - strand, within MIT1002_00718at 786.064 kb on - strand, within MIT1002_00718at 786.071 kb on - strand, within MIT1002_00718at 786.077 kb on + strand, within MIT1002_00718at 786.079 kb on + strand, within MIT1002_00718at 786.079 kb on - strand, within MIT1002_00718at 786.081 kb on - strand, within MIT1002_00718at 786.087 kb on - strand, within MIT1002_00718at 786.095 kb on - strand, within MIT1002_00718at 786.101 kb on - strand, within MIT1002_00718at 786.245 kb on + strand, within MIT1002_00718at 786.303 kb on - strandat 786.308 kb on + strandat 786.326 kb on - strandat 786.456 kb on - strandat 786.480 kb on + strandat 786.482 kb on + strandat 786.482 kb on + strandat 786.497 kb on + strand, within MIT1002_00719at 786.506 kb on - strand, within MIT1002_00719at 786.561 kb on + strand, within MIT1002_00719at 786.566 kb on + strand, within MIT1002_00719at 786.574 kb on - strand, within MIT1002_00719at 786.580 kb on + strand, within MIT1002_00719at 786.588 kb on - strand, within MIT1002_00719at 786.588 kb on - strand, within MIT1002_00719at 786.734 kb on - strand, within MIT1002_00719at 786.807 kb on - strand, within MIT1002_00719at 786.807 kb on - strand, within MIT1002_00719at 786.824 kb on - strand, within MIT1002_00719at 786.825 kb on - strand, within MIT1002_00719at 786.864 kb on - strand, within MIT1002_00719at 787.003 kb on + strand, within MIT1002_00719at 787.003 kb on + strand, within MIT1002_00719at 787.003 kb on + strand, within MIT1002_00719at 787.011 kb on - strand, within MIT1002_00719at 787.011 kb on - strand, within MIT1002_00719at 787.011 kb on - strand, within MIT1002_00719at 787.055 kb on - strand, within MIT1002_00719at 787.084 kb on - strand, within MIT1002_00719at 787.100 kb on - strand, within MIT1002_00719at 787.100 kb on - strand, within MIT1002_00719at 787.129 kb on - strand, within MIT1002_00719at 787.247 kb on + strand, within MIT1002_00719at 787.247 kb on + strand, within MIT1002_00719at 787.254 kb on + strand, within MIT1002_00719at 787.255 kb on - strand, within MIT1002_00719at 787.269 kb on + strand, within MIT1002_00719at 787.438 kb on - strand, within MIT1002_00719at 787.594 kb on - strand, within MIT1002_00719at 787.652 kb on + strandat 787.662 kb on - strandat 787.665 kb on + strandat 787.712 kb on - strandat 787.721 kb on + strandat 787.729 kb on - strandat 787.729 kb on - strandat 787.729 kb on - strandat 787.749 kb on + strandat 787.755 kb on - strandat 787.790 kb on - strandat 787.818 kb on + strandat 787.818 kb on + strandat 787.818 kb on + strandat 787.818 kb on + strandat 787.818 kb on + strandat 787.824 kb on - strandat 787.842 kb on + strandat 787.944 kb on + strandat 787.946 kb on + strandat 788.049 kb on - strandat 788.182 kb on + strandat 788.316 kb on + strand, within MIT1002_00720at 788.324 kb on - strand, within MIT1002_00720at 788.331 kb on + strand, within MIT1002_00720at 788.345 kb on - strand, within MIT1002_00720at 788.412 kb on - strand, within MIT1002_00720at 788.447 kb on + strand, within MIT1002_00720at 788.452 kb on - strand, within MIT1002_00720at 788.455 kb on - strand, within MIT1002_00720at 788.528 kb on - strand, within MIT1002_00720at 788.530 kb on - strand, within MIT1002_00720at 788.588 kb on + strand, within MIT1002_00720at 788.598 kb on + strandat 788.635 kb on + strandat 788.643 kb on - strandat 788.655 kb on + strandat 788.718 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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785,394 + -0.2
785,394 + -0.7
785,402 - -0.7
785,409 + -1.5
785,451 + -1.1
785,471 - MIT1002_00718 0.10 -2.6
785,500 - MIT1002_00718 0.13 -0.7
785,526 - MIT1002_00718 0.16 -2.2
785,538 - MIT1002_00718 0.17 +3.1
785,548 + MIT1002_00718 0.18 -0.4
785,564 + MIT1002_00718 0.20 -0.1
785,709 + MIT1002_00718 0.34 -0.5
785,724 + MIT1002_00718 0.36 +0.3
785,739 - MIT1002_00718 0.38 -0.2
785,778 + MIT1002_00718 0.41 -1.0
785,817 - MIT1002_00718 0.45 -0.7
785,833 + MIT1002_00718 0.47 +0.4
785,833 + MIT1002_00718 0.47 +2.2
785,833 + MIT1002_00718 0.47 -0.4
785,845 + MIT1002_00718 0.48 +0.5
785,859 + MIT1002_00718 0.50 -2.0
785,968 + MIT1002_00718 0.61 -0.3
785,977 + MIT1002_00718 0.62 +0.4
785,987 + MIT1002_00718 0.63 -2.5
785,995 - MIT1002_00718 0.64 -1.8
786,011 + MIT1002_00718 0.65 -1.5
786,019 - MIT1002_00718 0.66 -0.1
786,064 + MIT1002_00718 0.71 -0.1
786,064 + MIT1002_00718 0.71 +0.8
786,064 + MIT1002_00718 0.71 +0.3
786,064 - MIT1002_00718 0.71 +1.5
786,064 - MIT1002_00718 0.71 -0.2
786,071 - MIT1002_00718 0.71 -0.3
786,077 + MIT1002_00718 0.72 +0.6
786,079 + MIT1002_00718 0.72 +0.6
786,079 - MIT1002_00718 0.72 -0.8
786,081 - MIT1002_00718 0.72 +1.3
786,087 - MIT1002_00718 0.73 -1.0
786,095 - MIT1002_00718 0.74 +1.3
786,101 - MIT1002_00718 0.74 +0.1
786,245 + MIT1002_00718 0.89 +0.3
786,303 - +0.1
786,308 + -0.9
786,326 - +0.9
786,456 - -0.4
786,480 + +1.6
786,482 + -1.0
786,482 + -2.4
786,497 + MIT1002_00719 0.10 -2.8
786,506 - MIT1002_00719 0.11 -0.2
786,561 + MIT1002_00719 0.15 -1.2
786,566 + MIT1002_00719 0.15 -2.7
786,574 - MIT1002_00719 0.16 -1.8
786,580 + MIT1002_00719 0.16 -2.0
786,588 - MIT1002_00719 0.17 +0.6
786,588 - MIT1002_00719 0.17 +0.2
786,734 - MIT1002_00719 0.27 -2.4
786,807 - MIT1002_00719 0.32 -2.1
786,807 - MIT1002_00719 0.32 -0.3
786,824 - MIT1002_00719 0.33 -0.1
786,825 - MIT1002_00719 0.33 -1.9
786,864 - MIT1002_00719 0.36 +0.6
787,003 + MIT1002_00719 0.46 -2.4
787,003 + MIT1002_00719 0.46 -0.0
787,003 + MIT1002_00719 0.46 -1.5
787,011 - MIT1002_00719 0.46 -0.2
787,011 - MIT1002_00719 0.46 +0.1
787,011 - MIT1002_00719 0.46 +1.6
787,055 - MIT1002_00719 0.49 -0.4
787,084 - MIT1002_00719 0.51 -1.4
787,100 - MIT1002_00719 0.52 -0.3
787,100 - MIT1002_00719 0.52 -2.1
787,129 - MIT1002_00719 0.54 +0.3
787,247 + MIT1002_00719 0.63 +0.3
787,247 + MIT1002_00719 0.63 -1.2
787,254 + MIT1002_00719 0.63 -0.8
787,255 - MIT1002_00719 0.63 -0.8
787,269 + MIT1002_00719 0.64 -3.3
787,438 - MIT1002_00719 0.76 -0.2
787,594 - MIT1002_00719 0.87 -0.8
787,652 + -2.1
787,662 - -1.3
787,665 + -1.4
787,712 - +1.0
787,721 + +0.6
787,729 - -1.8
787,729 - -2.2
787,729 - -0.4
787,749 + -0.5
787,755 - -1.4
787,790 - +1.6
787,818 + +1.3
787,818 + +0.2
787,818 + -0.5
787,818 + -0.3
787,818 + -1.4
787,824 - +0.6
787,842 + -2.1
787,944 + +1.2
787,946 + -0.4
788,049 - -0.4
788,182 + +0.8
788,316 + MIT1002_00720 0.15 -0.4
788,324 - MIT1002_00720 0.17 -3.5
788,331 + MIT1002_00720 0.19 +0.7
788,345 - MIT1002_00720 0.23 +0.4
788,412 - MIT1002_00720 0.41 +0.9
788,447 + MIT1002_00720 0.50 +0.1
788,452 - MIT1002_00720 0.52 -1.2
788,455 - MIT1002_00720 0.52 +4.4
788,528 - MIT1002_00720 0.72 +0.1
788,530 - MIT1002_00720 0.73 -0.0
788,588 + MIT1002_00720 0.88 +0.9
788,598 + -0.7
788,635 + -1.8
788,643 - +1.3
788,655 + -0.2
788,718 + +0.4

Or see this region's nucleotide sequence