Experiment: monoculture; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00694 and MIT1002_00695 are separated by 354 nucleotides MIT1002_00695 and MIT1002_00696 are separated by 373 nucleotides
MIT1002_00694: MIT1002_00694 - Nitrate regulatory protein, at 757,242 to 758,582
_00694
MIT1002_00695: MIT1002_00695 - hypothetical protein, at 758,937 to 759,224
_00695
MIT1002_00696: MIT1002_00696 - Transposase IS116/IS110/IS902 family protein, at 759,598 to 760,623
_00696
Position (kb) 758
759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 757.948 kb on - strand, within MIT1002_00694 at 758.025 kb on - strand, within MIT1002_00694 at 758.028 kb on + strand, within MIT1002_00694 at 758.028 kb on + strand, within MIT1002_00694 at 758.036 kb on - strand, within MIT1002_00694 at 758.059 kb on + strand, within MIT1002_00694 at 758.155 kb on + strand, within MIT1002_00694 at 758.163 kb on - strand, within MIT1002_00694 at 758.179 kb on + strand, within MIT1002_00694 at 758.187 kb on - strand, within MIT1002_00694 at 758.189 kb on + strand, within MIT1002_00694 at 758.245 kb on + strand, within MIT1002_00694 at 758.246 kb on + strand, within MIT1002_00694 at 758.246 kb on + strand, within MIT1002_00694 at 758.246 kb on + strand, within MIT1002_00694 at 758.246 kb on + strand, within MIT1002_00694 at 758.246 kb on + strand, within MIT1002_00694 at 758.246 kb on + strand, within MIT1002_00694 at 758.246 kb on + strand, within MIT1002_00694 at 758.246 kb on + strand, within MIT1002_00694 at 758.246 kb on + strand, within MIT1002_00694 at 758.254 kb on - strand, within MIT1002_00694 at 758.254 kb on - strand, within MIT1002_00694 at 758.254 kb on - strand, within MIT1002_00694 at 758.254 kb on - strand, within MIT1002_00694 at 758.254 kb on - strand, within MIT1002_00694 at 758.254 kb on - strand, within MIT1002_00694 at 758.254 kb on - strand, within MIT1002_00694 at 758.283 kb on + strand, within MIT1002_00694 at 758.342 kb on + strand, within MIT1002_00694 at 758.352 kb on + strand, within MIT1002_00694 at 758.358 kb on - strand, within MIT1002_00694 at 758.395 kb on - strand, within MIT1002_00694 at 758.583 kb on + strand at 758.591 kb on - strand at 758.591 kb on - strand at 758.604 kb on + strand at 758.678 kb on + strand at 758.683 kb on + strand at 758.685 kb on + strand at 758.688 kb on + strand at 758.691 kb on - strand at 758.701 kb on - strand at 758.703 kb on - strand at 758.717 kb on + strand at 758.725 kb on - strand at 758.786 kb on - strand at 758.829 kb on + strand at 758.831 kb on + strand at 758.839 kb on - strand at 758.839 kb on - strand at 758.839 kb on - strand at 758.839 kb on - strand at 758.839 kb on - strand at 758.839 kb on - strand at 758.922 kb on + strand at 758.958 kb on + strand at 759.139 kb on - strand, within MIT1002_00695 at 759.167 kb on - strand, within MIT1002_00695 at 759.246 kb on + strand at 759.273 kb on - strand at 759.279 kb on - strand at 759.306 kb on - strand at 759.324 kb on + strand at 759.332 kb on - strand at 759.415 kb on + strand at 759.436 kb on + strand at 759.444 kb on - strand at 759.444 kb on - strand at 759.449 kb on - strand at 759.479 kb on - strand at 759.498 kb on + strand at 759.498 kb on + strand at 759.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2 remove 757,948 - MIT1002_00694 0.53 +0.6 758,025 - MIT1002_00694 0.58 -0.4 758,028 + MIT1002_00694 0.59 -0.2 758,028 + MIT1002_00694 0.59 +0.0 758,036 - MIT1002_00694 0.59 +0.8 758,059 + MIT1002_00694 0.61 +0.0 758,155 + MIT1002_00694 0.68 -0.3 758,163 - MIT1002_00694 0.69 +0.8 758,179 + MIT1002_00694 0.70 -0.2 758,187 - MIT1002_00694 0.70 -0.1 758,189 + MIT1002_00694 0.71 +2.0 758,245 + MIT1002_00694 0.75 -1.6 758,246 + MIT1002_00694 0.75 +0.1 758,246 + MIT1002_00694 0.75 +0.0 758,246 + MIT1002_00694 0.75 +1.6 758,246 + MIT1002_00694 0.75 -0.8 758,246 + MIT1002_00694 0.75 +0.8 758,246 + MIT1002_00694 0.75 +0.3 758,246 + MIT1002_00694 0.75 +0.0 758,246 + MIT1002_00694 0.75 +1.4 758,246 + MIT1002_00694 0.75 +0.6 758,254 - MIT1002_00694 0.75 -1.5 758,254 - MIT1002_00694 0.75 -0.5 758,254 - MIT1002_00694 0.75 -0.5 758,254 - MIT1002_00694 0.75 -0.8 758,254 - MIT1002_00694 0.75 +2.1 758,254 - MIT1002_00694 0.75 +1.0 758,254 - MIT1002_00694 0.75 +0.1 758,283 + MIT1002_00694 0.78 +0.2 758,342 + MIT1002_00694 0.82 +0.6 758,352 + MIT1002_00694 0.83 -1.2 758,358 - MIT1002_00694 0.83 -1.8 758,395 - MIT1002_00694 0.86 +0.5 758,583 + -0.3 758,591 - -1.0 758,591 - +0.9 758,604 + -0.5 758,678 + +1.0 758,683 + -0.4 758,685 + +0.0 758,688 + +0.5 758,691 - +0.1 758,701 - +1.0 758,703 - -1.7 758,717 + +1.8 758,725 - +0.4 758,786 - -0.6 758,829 + +0.1 758,831 + +0.4 758,839 - -1.2 758,839 - -0.0 758,839 - +0.2 758,839 - +0.3 758,839 - -1.0 758,839 - +0.3 758,922 + +1.9 758,958 + -1.3 759,139 - MIT1002_00695 0.70 +0.5 759,167 - MIT1002_00695 0.80 -1.7 759,246 + -0.9 759,273 - -1.6 759,279 - +0.4 759,306 - -0.2 759,324 + -2.9 759,332 - -2.1 759,415 + -1.3 759,436 + -0.9 759,444 - -0.2 759,444 - -0.4 759,449 - +0.1 759,479 - -0.6 759,498 + +0.2 759,498 + +1.0 759,501 - -0.1
Or see this region's nucleotide sequence