Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00469

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00468 and MIT1002_00469 are separated by 37 nucleotidesMIT1002_00469 and MIT1002_00470 overlap by 4 nucleotidesMIT1002_00470 and MIT1002_00471 overlap by 4 nucleotides MIT1002_00468: MIT1002_00468 - Argininosuccinate synthase, at 511,935 to 513,146 _00468 MIT1002_00469: MIT1002_00469 - Ornithine carbamoyltransferase, at 513,184 to 514,095 _00469 MIT1002_00470: MIT1002_00470 - Acetylglutamate kinase, at 514,092 to 514,937 _00470 MIT1002_00471: MIT1002_00471 - N-acetyl-gamma-glutamyl-phosphate reductase, at 514,934 to 515,947 _00471 Position (kb) 513 514 515Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 512.207 kb on - strand, within MIT1002_00468at 512.207 kb on - strand, within MIT1002_00468at 512.289 kb on - strand, within MIT1002_00468at 512.355 kb on + strand, within MIT1002_00468at 512.375 kb on + strand, within MIT1002_00468at 512.375 kb on + strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.489 kb on + strand, within MIT1002_00468at 512.490 kb on - strand, within MIT1002_00468at 512.494 kb on + strand, within MIT1002_00468at 512.497 kb on - strand, within MIT1002_00468at 512.499 kb on + strand, within MIT1002_00468at 512.502 kb on - strand, within MIT1002_00468at 512.529 kb on + strand, within MIT1002_00468at 512.532 kb on - strand, within MIT1002_00468at 512.537 kb on - strand, within MIT1002_00468at 512.599 kb on - strand, within MIT1002_00468at 512.710 kb on + strand, within MIT1002_00468at 512.726 kb on + strand, within MIT1002_00468at 512.726 kb on + strand, within MIT1002_00468at 512.777 kb on - strand, within MIT1002_00468at 512.835 kb on - strand, within MIT1002_00468at 512.866 kb on + strand, within MIT1002_00468at 512.879 kb on + strand, within MIT1002_00468at 512.888 kb on - strand, within MIT1002_00468at 512.888 kb on - strand, within MIT1002_00468at 512.912 kb on - strand, within MIT1002_00468at 512.922 kb on + strand, within MIT1002_00468at 512.930 kb on - strand, within MIT1002_00468at 513.016 kb on + strand, within MIT1002_00468at 513.029 kb on - strandat 513.107 kb on + strandat 513.112 kb on + strandat 513.112 kb on + strandat 513.120 kb on - strandat 513.232 kb on + strandat 513.308 kb on + strand, within MIT1002_00469at 513.326 kb on - strand, within MIT1002_00469at 513.356 kb on + strand, within MIT1002_00469at 513.356 kb on + strand, within MIT1002_00469at 513.393 kb on + strand, within MIT1002_00469at 513.401 kb on - strand, within MIT1002_00469at 513.439 kb on + strand, within MIT1002_00469at 513.439 kb on + strand, within MIT1002_00469at 513.447 kb on - strand, within MIT1002_00469at 513.447 kb on - strand, within MIT1002_00469at 513.461 kb on + strand, within MIT1002_00469at 513.461 kb on + strand, within MIT1002_00469at 513.461 kb on + strand, within MIT1002_00469at 513.469 kb on - strand, within MIT1002_00469at 513.469 kb on - strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.560 kb on - strand, within MIT1002_00469at 513.580 kb on + strand, within MIT1002_00469at 513.620 kb on - strand, within MIT1002_00469at 513.635 kb on + strand, within MIT1002_00469at 513.646 kb on + strand, within MIT1002_00469at 513.653 kb on - strand, within MIT1002_00469at 513.654 kb on - strand, within MIT1002_00469at 513.700 kb on + strand, within MIT1002_00469at 513.806 kb on + strand, within MIT1002_00469at 513.833 kb on - strand, within MIT1002_00469at 513.881 kb on + strand, within MIT1002_00469at 513.887 kb on - strand, within MIT1002_00469at 513.887 kb on - strand, within MIT1002_00469at 513.887 kb on - strand, within MIT1002_00469at 513.928 kb on + strand, within MIT1002_00469at 513.963 kb on + strand, within MIT1002_00469at 514.068 kb on + strandat 514.075 kb on + strandat 514.075 kb on + strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.089 kb on + strandat 514.134 kb on + strandat 514.134 kb on + strandat 514.142 kb on - strandat 514.159 kb on + strandat 514.167 kb on - strandat 514.169 kb on + strandat 514.177 kb on - strand, within MIT1002_00470at 514.189 kb on - strand, within MIT1002_00470at 514.297 kb on - strand, within MIT1002_00470at 514.317 kb on + strand, within MIT1002_00470at 514.325 kb on - strand, within MIT1002_00470at 514.428 kb on - strand, within MIT1002_00470at 514.487 kb on + strand, within MIT1002_00470at 514.488 kb on + strand, within MIT1002_00470at 514.496 kb on + strand, within MIT1002_00470at 514.587 kb on - strand, within MIT1002_00470at 514.592 kb on - strand, within MIT1002_00470at 514.600 kb on + strand, within MIT1002_00470at 514.616 kb on - strand, within MIT1002_00470at 514.647 kb on + strand, within MIT1002_00470at 514.655 kb on - strand, within MIT1002_00470at 514.655 kb on - strand, within MIT1002_00470at 514.655 kb on - strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.672 kb on + strand, within MIT1002_00470at 514.680 kb on - strand, within MIT1002_00470at 514.689 kb on + strand, within MIT1002_00470at 514.695 kb on + strand, within MIT1002_00470at 514.720 kb on + strand, within MIT1002_00470at 514.720 kb on + strand, within MIT1002_00470at 514.725 kb on + strand, within MIT1002_00470at 514.728 kb on - strand, within MIT1002_00470at 514.749 kb on - strand, within MIT1002_00470at 514.767 kb on + strand, within MIT1002_00470at 514.796 kb on + strand, within MIT1002_00470at 514.804 kb on - strand, within MIT1002_00470at 514.850 kb on + strand, within MIT1002_00470at 514.903 kb on - strandat 514.933 kb on + strandat 514.939 kb on + strandat 514.947 kb on - strandat 514.948 kb on - strandat 514.948 kb on - strandat 514.949 kb on + strandat 514.958 kb on - strandat 514.974 kb on + strandat 515.007 kb on - strandat 515.033 kb on + strandat 515.033 kb on + strandat 515.074 kb on - strand, within MIT1002_00471

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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512,207 - MIT1002_00468 0.22 -2.9
512,207 - MIT1002_00468 0.22 -4.8
512,289 - MIT1002_00468 0.29 -1.1
512,355 + MIT1002_00468 0.35 -1.1
512,375 + MIT1002_00468 0.36 -1.9
512,375 + MIT1002_00468 0.36 -1.4
512,383 - MIT1002_00468 0.37 -5.8
512,383 - MIT1002_00468 0.37 -0.4
512,383 - MIT1002_00468 0.37 -2.5
512,383 - MIT1002_00468 0.37 -3.3
512,383 - MIT1002_00468 0.37 -4.5
512,489 + MIT1002_00468 0.46 -2.8
512,490 - MIT1002_00468 0.46 -2.6
512,494 + MIT1002_00468 0.46 +0.1
512,497 - MIT1002_00468 0.46 -1.5
512,499 + MIT1002_00468 0.47 -2.8
512,502 - MIT1002_00468 0.47 -4.6
512,529 + MIT1002_00468 0.49 -2.4
512,532 - MIT1002_00468 0.49 -3.6
512,537 - MIT1002_00468 0.50 -1.2
512,599 - MIT1002_00468 0.55 -4.4
512,710 + MIT1002_00468 0.64 -2.4
512,726 + MIT1002_00468 0.65 -1.4
512,726 + MIT1002_00468 0.65 -2.6
512,777 - MIT1002_00468 0.69 -0.8
512,835 - MIT1002_00468 0.74 -3.4
512,866 + MIT1002_00468 0.77 -4.5
512,879 + MIT1002_00468 0.78 -2.5
512,888 - MIT1002_00468 0.79 -8.1
512,888 - MIT1002_00468 0.79 -3.2
512,912 - MIT1002_00468 0.81 -1.2
512,922 + MIT1002_00468 0.81 -2.2
512,930 - MIT1002_00468 0.82 -3.4
513,016 + MIT1002_00468 0.89 -1.8
513,029 - -1.4
513,107 + -4.3
513,112 + -2.5
513,112 + -2.6
513,120 - -4.0
513,232 + -4.4
513,308 + MIT1002_00469 0.14 -5.4
513,326 - MIT1002_00469 0.16 -3.2
513,356 + MIT1002_00469 0.19 -2.6
513,356 + MIT1002_00469 0.19 -4.6
513,393 + MIT1002_00469 0.23 -1.6
513,401 - MIT1002_00469 0.24 -2.4
513,439 + MIT1002_00469 0.28 -0.2
513,439 + MIT1002_00469 0.28 -3.2
513,447 - MIT1002_00469 0.29 -2.2
513,447 - MIT1002_00469 0.29 -5.1
513,461 + MIT1002_00469 0.30 -3.5
513,461 + MIT1002_00469 0.30 -4.2
513,461 + MIT1002_00469 0.30 -1.2
513,469 - MIT1002_00469 0.31 -2.3
513,469 - MIT1002_00469 0.31 -4.3
513,552 + MIT1002_00469 0.40 -3.0
513,552 + MIT1002_00469 0.40 -3.6
513,552 + MIT1002_00469 0.40 -3.3
513,552 + MIT1002_00469 0.40 -4.5
513,560 - MIT1002_00469 0.41 -2.8
513,580 + MIT1002_00469 0.43 -2.2
513,620 - MIT1002_00469 0.48 -3.3
513,635 + MIT1002_00469 0.49 -3.0
513,646 + MIT1002_00469 0.51 -3.1
513,653 - MIT1002_00469 0.51 -1.9
513,654 - MIT1002_00469 0.52 -1.3
513,700 + MIT1002_00469 0.57 -4.6
513,806 + MIT1002_00469 0.68 -3.0
513,833 - MIT1002_00469 0.71 -2.2
513,881 + MIT1002_00469 0.76 -3.6
513,887 - MIT1002_00469 0.77 -3.1
513,887 - MIT1002_00469 0.77 -3.2
513,887 - MIT1002_00469 0.77 -3.3
513,928 + MIT1002_00469 0.82 -1.3
513,963 + MIT1002_00469 0.85 -3.4
514,068 + -2.6
514,075 + -2.5
514,075 + +0.3
514,083 - -3.4
514,083 - -0.4
514,083 - -2.8
514,083 - -2.4
514,083 - -0.4
514,083 - -4.3
514,083 - -5.1
514,089 + -6.3
514,134 + -3.7
514,134 + -5.2
514,142 - -0.2
514,159 + -4.1
514,167 - -0.1
514,169 + -2.0
514,177 - MIT1002_00470 0.10 +0.3
514,189 - MIT1002_00470 0.11 -0.1
514,297 - MIT1002_00470 0.24 -1.9
514,317 + MIT1002_00470 0.27 -0.7
514,325 - MIT1002_00470 0.28 -4.0
514,428 - MIT1002_00470 0.40 -2.0
514,487 + MIT1002_00470 0.47 -4.8
514,488 + MIT1002_00470 0.47 -3.9
514,496 + MIT1002_00470 0.48 -3.3
514,587 - MIT1002_00470 0.59 -3.0
514,592 - MIT1002_00470 0.59 -3.5
514,600 + MIT1002_00470 0.60 -4.0
514,616 - MIT1002_00470 0.62 -0.4
514,647 + MIT1002_00470 0.66 -2.1
514,655 - MIT1002_00470 0.67 -7.0
514,655 - MIT1002_00470 0.67 -4.5
514,655 - MIT1002_00470 0.67 -1.4
514,672 + MIT1002_00470 0.69 -2.8
514,672 + MIT1002_00470 0.69 -4.0
514,672 + MIT1002_00470 0.69 -2.8
514,672 + MIT1002_00470 0.69 -5.1
514,680 - MIT1002_00470 0.70 -3.1
514,689 + MIT1002_00470 0.71 -3.6
514,695 + MIT1002_00470 0.71 -3.5
514,720 + MIT1002_00470 0.74 -5.2
514,720 + MIT1002_00470 0.74 -3.3
514,725 + MIT1002_00470 0.75 -5.0
514,728 - MIT1002_00470 0.75 -3.0
514,749 - MIT1002_00470 0.78 -2.9
514,767 + MIT1002_00470 0.80 -3.9
514,796 + MIT1002_00470 0.83 -3.0
514,804 - MIT1002_00470 0.84 -3.8
514,850 + MIT1002_00470 0.90 -1.6
514,903 - -0.5
514,933 + -3.0
514,939 + -2.8
514,947 - +0.1
514,948 - +1.0
514,948 - -0.5
514,949 + -2.1
514,958 - -0.2
514,974 + -3.7
515,007 - -3.3
515,033 + -0.9
515,033 + -4.0
515,074 - MIT1002_00471 0.14 -3.4

Or see this region's nucleotide sequence