Experiment: monoculture; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00368 and MIT1002_00369 overlap by 1 nucleotides MIT1002_00369 and MIT1002_00370 are separated by 65 nucleotides MIT1002_00370 and MIT1002_00371 overlap by 4 nucleotides
MIT1002_00368: MIT1002_00368 - 6'''-hydroxyparomomycin C oxidase, at 396,846 to 398,531
_00368
MIT1002_00369: MIT1002_00369 - hypothetical protein, at 398,531 to 399,148
_00369
MIT1002_00370: MIT1002_00370 - hypothetical protein, at 399,214 to 399,981
_00370
MIT1002_00371: MIT1002_00371 - Alcohol dehydrogenase 2, at 399,978 to 401,126
_00371
Position (kb) 398
399
400 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 397.597 kb on - strand, within MIT1002_00368 at 397.603 kb on + strand, within MIT1002_00368 at 397.603 kb on + strand, within MIT1002_00368 at 397.741 kb on + strand, within MIT1002_00368 at 397.754 kb on - strand, within MIT1002_00368 at 397.914 kb on - strand, within MIT1002_00368 at 397.921 kb on + strand, within MIT1002_00368 at 398.041 kb on - strand, within MIT1002_00368 at 398.044 kb on - strand, within MIT1002_00368 at 398.052 kb on - strand, within MIT1002_00368 at 398.058 kb on - strand, within MIT1002_00368 at 398.060 kb on + strand, within MIT1002_00368 at 398.068 kb on - strand, within MIT1002_00368 at 398.068 kb on - strand, within MIT1002_00368 at 398.068 kb on - strand, within MIT1002_00368 at 398.197 kb on - strand, within MIT1002_00368 at 398.229 kb on + strand, within MIT1002_00368 at 398.247 kb on + strand, within MIT1002_00368 at 398.247 kb on + strand, within MIT1002_00368 at 398.253 kb on - strand, within MIT1002_00368 at 398.285 kb on + strand, within MIT1002_00368 at 398.307 kb on - strand, within MIT1002_00368 at 398.319 kb on - strand, within MIT1002_00368 at 398.345 kb on - strand, within MIT1002_00368 at 398.362 kb on + strand, within MIT1002_00368 at 398.362 kb on + strand, within MIT1002_00368 at 398.446 kb on + strand at 398.446 kb on + strand at 398.446 kb on + strand at 398.446 kb on + strand at 398.446 kb on + strand at 398.451 kb on + strand at 398.454 kb on - strand at 398.454 kb on - strand at 398.454 kb on - strand at 398.454 kb on - strand at 398.454 kb on - strand at 398.464 kb on + strand at 398.488 kb on - strand at 398.607 kb on + strand, within MIT1002_00369 at 398.630 kb on - strand, within MIT1002_00369 at 398.758 kb on - strand, within MIT1002_00369 at 398.774 kb on + strand, within MIT1002_00369 at 398.782 kb on - strand, within MIT1002_00369 at 398.987 kb on - strand, within MIT1002_00369 at 398.996 kb on - strand, within MIT1002_00369 at 399.090 kb on - strand at 399.095 kb on - strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.179 kb on + strand at 399.179 kb on + strand at 399.181 kb on + strand at 399.182 kb on - strand at 399.203 kb on + strand at 399.224 kb on - strand at 399.307 kb on + strand, within MIT1002_00370 at 399.325 kb on - strand, within MIT1002_00370 at 399.380 kb on + strand, within MIT1002_00370 at 399.388 kb on - strand, within MIT1002_00370 at 399.423 kb on - strand, within MIT1002_00370 at 399.454 kb on + strand, within MIT1002_00370 at 399.460 kb on + strand, within MIT1002_00370 at 399.460 kb on - strand, within MIT1002_00370 at 399.469 kb on + strand, within MIT1002_00370 at 399.469 kb on + strand, within MIT1002_00370 at 399.477 kb on - strand, within MIT1002_00370 at 399.495 kb on + strand, within MIT1002_00370 at 399.555 kb on + strand, within MIT1002_00370 at 399.578 kb on - strand, within MIT1002_00370 at 399.582 kb on + strand, within MIT1002_00370 at 399.660 kb on + strand, within MIT1002_00370 at 399.666 kb on + strand, within MIT1002_00370 at 399.668 kb on - strand, within MIT1002_00370 at 399.668 kb on - strand, within MIT1002_00370 at 399.715 kb on - strand, within MIT1002_00370 at 399.717 kb on + strand, within MIT1002_00370 at 399.717 kb on + strand, within MIT1002_00370 at 399.725 kb on - strand, within MIT1002_00370 at 399.725 kb on - strand, within MIT1002_00370 at 399.725 kb on - strand, within MIT1002_00370 at 399.725 kb on - strand, within MIT1002_00370 at 399.739 kb on + strand, within MIT1002_00370 at 399.747 kb on - strand, within MIT1002_00370 at 399.747 kb on - strand, within MIT1002_00370 at 399.751 kb on + strand, within MIT1002_00370 at 399.759 kb on - strand, within MIT1002_00370 at 399.812 kb on + strand, within MIT1002_00370 at 399.812 kb on + strand, within MIT1002_00370 at 399.820 kb on + strand, within MIT1002_00370 at 399.820 kb on - strand, within MIT1002_00370 at 399.820 kb on - strand, within MIT1002_00370 at 399.833 kb on + strand, within MIT1002_00370 at 399.841 kb on + strand, within MIT1002_00370 at 399.841 kb on + strand, within MIT1002_00370 at 399.841 kb on + strand, within MIT1002_00370 at 399.841 kb on + strand, within MIT1002_00370 at 399.841 kb on + strand, within MIT1002_00370 at 399.849 kb on - strand, within MIT1002_00370 at 399.887 kb on - strand, within MIT1002_00370 at 399.916 kb on - strand at 399.916 kb on - strand at 399.916 kb on - strand at 399.916 kb on - strand at 399.942 kb on - strand at 399.965 kb on + strand at 399.966 kb on + strand at 400.010 kb on + strand at 400.018 kb on - strand at 400.018 kb on - strand at 400.110 kb on + strand, within MIT1002_00371
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2 remove 397,597 - MIT1002_00368 0.45 +1.2 397,603 + MIT1002_00368 0.45 +0.5 397,603 + MIT1002_00368 0.45 -2.9 397,741 + MIT1002_00368 0.53 +0.0 397,754 - MIT1002_00368 0.54 +1.6 397,914 - MIT1002_00368 0.63 +0.0 397,921 + MIT1002_00368 0.64 +0.1 398,041 - MIT1002_00368 0.71 +1.1 398,044 - MIT1002_00368 0.71 +0.0 398,052 - MIT1002_00368 0.72 -0.5 398,058 - MIT1002_00368 0.72 +1.2 398,060 + MIT1002_00368 0.72 +1.7 398,068 - MIT1002_00368 0.72 -0.3 398,068 - MIT1002_00368 0.72 -0.6 398,068 - MIT1002_00368 0.72 +0.7 398,197 - MIT1002_00368 0.80 +0.0 398,229 + MIT1002_00368 0.82 +0.5 398,247 + MIT1002_00368 0.83 -0.9 398,247 + MIT1002_00368 0.83 +0.3 398,253 - MIT1002_00368 0.83 +0.0 398,285 + MIT1002_00368 0.85 +1.1 398,307 - MIT1002_00368 0.87 +0.3 398,319 - MIT1002_00368 0.87 -0.6 398,345 - MIT1002_00368 0.89 +0.9 398,362 + MIT1002_00368 0.90 -1.8 398,362 + MIT1002_00368 0.90 +0.5 398,446 + +0.2 398,446 + -0.2 398,446 + +0.4 398,446 + +1.4 398,446 + -1.2 398,451 + +1.0 398,454 - +1.4 398,454 - +0.2 398,454 - +0.2 398,454 - +1.8 398,454 - -1.8 398,464 + +0.7 398,488 - -1.1 398,607 + MIT1002_00369 0.12 +1.4 398,630 - MIT1002_00369 0.16 +0.1 398,758 - MIT1002_00369 0.37 +0.2 398,774 + MIT1002_00369 0.39 +0.5 398,782 - MIT1002_00369 0.41 -1.0 398,987 - MIT1002_00369 0.74 +0.5 398,996 - MIT1002_00369 0.75 +0.7 399,090 - +0.7 399,095 - -1.3 399,143 + -2.5 399,143 + +0.1 399,143 + -0.4 399,143 + +1.7 399,143 + -0.1 399,143 + -0.1 399,143 + +0.6 399,143 + +1.7 399,143 + -2.6 399,143 + -0.8 399,143 + -1.0 399,143 + -0.5 399,143 + -1.6 399,143 + +2.5 399,143 + -0.2 399,143 + +0.0 399,151 - -0.4 399,151 - -1.8 399,151 - -1.5 399,151 - +1.9 399,151 - +2.0 399,151 - -0.3 399,151 - +2.7 399,151 - +0.6 399,151 - -0.3 399,151 - -0.1 399,151 - -0.4 399,151 - -0.2 399,151 - +2.6 399,151 - -2.3 399,151 - -0.3 399,151 - +2.3 399,151 - +1.2 399,179 + -0.1 399,179 + +0.1 399,181 + -0.8 399,182 - -2.7 399,203 + -0.2 399,224 - +0.1 399,307 + MIT1002_00370 0.12 -0.2 399,325 - MIT1002_00370 0.14 -1.1 399,380 + MIT1002_00370 0.22 -0.6 399,388 - MIT1002_00370 0.23 -0.1 399,423 - MIT1002_00370 0.27 -0.2 399,454 + MIT1002_00370 0.31 +0.5 399,460 + MIT1002_00370 0.32 -0.6 399,460 - MIT1002_00370 0.32 +0.0 399,469 + MIT1002_00370 0.33 +0.9 399,469 + MIT1002_00370 0.33 +0.0 399,477 - MIT1002_00370 0.34 +0.7 399,495 + MIT1002_00370 0.37 +0.4 399,555 + MIT1002_00370 0.44 -0.2 399,578 - MIT1002_00370 0.47 -1.2 399,582 + MIT1002_00370 0.48 -0.8 399,660 + MIT1002_00370 0.58 -0.8 399,666 + MIT1002_00370 0.59 +0.0 399,668 - MIT1002_00370 0.59 +1.8 399,668 - MIT1002_00370 0.59 +0.1 399,715 - MIT1002_00370 0.65 -0.8 399,717 + MIT1002_00370 0.65 -0.0 399,717 + MIT1002_00370 0.65 -0.8 399,725 - MIT1002_00370 0.67 -0.6 399,725 - MIT1002_00370 0.67 +0.1 399,725 - MIT1002_00370 0.67 -0.5 399,725 - MIT1002_00370 0.67 +0.2 399,739 + MIT1002_00370 0.68 -0.2 399,747 - MIT1002_00370 0.69 +0.9 399,747 - MIT1002_00370 0.69 -0.1 399,751 + MIT1002_00370 0.70 +1.2 399,759 - MIT1002_00370 0.71 +0.8 399,812 + MIT1002_00370 0.78 -1.5 399,812 + MIT1002_00370 0.78 -0.1 399,820 + MIT1002_00370 0.79 -0.7 399,820 - MIT1002_00370 0.79 -0.3 399,820 - MIT1002_00370 0.79 -0.5 399,833 + MIT1002_00370 0.81 -2.2 399,841 + MIT1002_00370 0.82 +0.8 399,841 + MIT1002_00370 0.82 +0.4 399,841 + MIT1002_00370 0.82 -2.0 399,841 + MIT1002_00370 0.82 -1.3 399,841 + MIT1002_00370 0.82 -1.0 399,849 - MIT1002_00370 0.83 -1.1 399,887 - MIT1002_00370 0.88 -0.6 399,916 - +0.3 399,916 - +0.6 399,916 - -2.1 399,916 - +0.8 399,942 - +0.0 399,965 + -0.4 399,966 + +2.0 400,010 + -1.8 400,018 - -0.4 400,018 - +1.7 400,110 + MIT1002_00371 0.11 +0.4
Or see this region's nucleotide sequence