Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00233

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00232 and MIT1002_00233 are separated by 157 nucleotidesMIT1002_00233 and MIT1002_00234 are separated by 154 nucleotides MIT1002_00232: MIT1002_00232 - Beta-galactosidase, at 258,126 to 261,245 _00232 MIT1002_00233: MIT1002_00233 - Dye resistance protein, at 261,403 to 262,110 _00233 MIT1002_00234: MIT1002_00234 - Sensor protein ZraS, at 262,265 to 263,911 _00234 Position (kb) 261 262 263Strain fitness (log2 ratio) -2 -1 0 1 2 3at 260.420 kb on - strand, within MIT1002_00232at 260.430 kb on + strand, within MIT1002_00232at 260.523 kb on + strand, within MIT1002_00232at 260.531 kb on - strand, within MIT1002_00232at 260.631 kb on + strand, within MIT1002_00232at 260.631 kb on + strand, within MIT1002_00232at 260.640 kb on - strand, within MIT1002_00232at 260.646 kb on - strand, within MIT1002_00232at 260.646 kb on - strand, within MIT1002_00232at 260.653 kb on + strand, within MIT1002_00232at 260.661 kb on - strand, within MIT1002_00232at 260.731 kb on - strand, within MIT1002_00232at 260.731 kb on - strand, within MIT1002_00232at 260.793 kb on - strand, within MIT1002_00232at 260.871 kb on - strand, within MIT1002_00232at 260.871 kb on - strand, within MIT1002_00232at 260.874 kb on + strand, within MIT1002_00232at 260.879 kb on + strand, within MIT1002_00232at 260.887 kb on - strand, within MIT1002_00232at 260.924 kb on - strand, within MIT1002_00232at 260.937 kb on - strandat 261.027 kb on - strandat 261.099 kb on + strandat 261.099 kb on + strandat 261.107 kb on - strandat 261.107 kb on - strandat 261.119 kb on - strandat 261.132 kb on + strandat 261.140 kb on - strandat 261.172 kb on - strandat 261.234 kb on + strandat 261.252 kb on + strandat 261.260 kb on - strandat 261.399 kb on + strandat 261.399 kb on + strandat 261.402 kb on - strandat 261.407 kb on - strandat 261.516 kb on + strand, within MIT1002_00233at 261.538 kb on + strand, within MIT1002_00233at 261.591 kb on - strand, within MIT1002_00233at 261.740 kb on - strand, within MIT1002_00233at 261.877 kb on + strand, within MIT1002_00233at 261.902 kb on + strand, within MIT1002_00233at 261.906 kb on - strand, within MIT1002_00233at 262.023 kb on + strand, within MIT1002_00233at 262.031 kb on - strand, within MIT1002_00233at 262.031 kb on - strand, within MIT1002_00233at 262.112 kb on + strandat 262.114 kb on + strandat 262.122 kb on - strandat 262.224 kb on - strandat 262.224 kb on - strandat 262.224 kb on - strandat 262.381 kb on - strandat 262.485 kb on + strand, within MIT1002_00234at 262.494 kb on + strand, within MIT1002_00234at 262.531 kb on + strand, within MIT1002_00234at 262.562 kb on - strand, within MIT1002_00234at 262.562 kb on - strand, within MIT1002_00234at 262.636 kb on + strand, within MIT1002_00234at 262.636 kb on + strand, within MIT1002_00234at 262.644 kb on - strand, within MIT1002_00234at 262.653 kb on + strand, within MIT1002_00234at 262.702 kb on - strand, within MIT1002_00234at 262.761 kb on + strand, within MIT1002_00234at 262.769 kb on - strand, within MIT1002_00234at 262.779 kb on - strand, within MIT1002_00234at 262.789 kb on - strand, within MIT1002_00234at 262.797 kb on + strand, within MIT1002_00234at 262.858 kb on + strand, within MIT1002_00234at 262.906 kb on + strand, within MIT1002_00234at 262.914 kb on - strand, within MIT1002_00234at 262.924 kb on - strand, within MIT1002_00234at 262.942 kb on + strand, within MIT1002_00234at 262.942 kb on + strand, within MIT1002_00234at 262.942 kb on + strand, within MIT1002_00234at 262.942 kb on + strand, within MIT1002_00234at 262.943 kb on + strand, within MIT1002_00234at 262.943 kb on + strand, within MIT1002_00234at 262.950 kb on - strand, within MIT1002_00234at 262.950 kb on - strand, within MIT1002_00234at 262.950 kb on - strand, within MIT1002_00234at 262.950 kb on - strand, within MIT1002_00234at 262.951 kb on - strand, within MIT1002_00234at 263.075 kb on - strand, within MIT1002_00234at 263.090 kb on - strand, within MIT1002_00234

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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260,420 - MIT1002_00232 0.74 -0.1
260,430 + MIT1002_00232 0.74 +1.4
260,523 + MIT1002_00232 0.77 +0.2
260,531 - MIT1002_00232 0.77 +0.4
260,631 + MIT1002_00232 0.80 +0.5
260,631 + MIT1002_00232 0.80 +2.4
260,640 - MIT1002_00232 0.81 +0.3
260,646 - MIT1002_00232 0.81 -0.2
260,646 - MIT1002_00232 0.81 +1.4
260,653 + MIT1002_00232 0.81 -0.8
260,661 - MIT1002_00232 0.81 -0.1
260,731 - MIT1002_00232 0.83 -0.1
260,731 - MIT1002_00232 0.83 -0.2
260,793 - MIT1002_00232 0.85 +0.5
260,871 - MIT1002_00232 0.88 +0.6
260,871 - MIT1002_00232 0.88 -0.1
260,874 + MIT1002_00232 0.88 +1.1
260,879 + MIT1002_00232 0.88 -1.1
260,887 - MIT1002_00232 0.88 -1.1
260,924 - MIT1002_00232 0.90 +2.7
260,937 - +2.1
261,027 - +0.0
261,099 + +1.0
261,099 + +0.3
261,107 - +0.8
261,107 - -0.7
261,119 - -0.6
261,132 + -0.4
261,140 - -0.1
261,172 - -1.0
261,234 + -0.1
261,252 + +0.2
261,260 - -0.3
261,399 + -0.2
261,399 + +1.8
261,402 - +0.9
261,407 - -0.1
261,516 + MIT1002_00233 0.16 +0.7
261,538 + MIT1002_00233 0.19 -2.1
261,591 - MIT1002_00233 0.27 -0.7
261,740 - MIT1002_00233 0.48 +0.1
261,877 + MIT1002_00233 0.67 -0.9
261,902 + MIT1002_00233 0.70 +0.1
261,906 - MIT1002_00233 0.71 -0.3
262,023 + MIT1002_00233 0.88 -2.3
262,031 - MIT1002_00233 0.89 -1.6
262,031 - MIT1002_00233 0.89 -0.6
262,112 + -0.3
262,114 + -1.4
262,122 - +2.1
262,224 - +0.1
262,224 - +1.6
262,224 - -0.9
262,381 - +0.7
262,485 + MIT1002_00234 0.13 +0.5
262,494 + MIT1002_00234 0.14 +1.8
262,531 + MIT1002_00234 0.16 +0.3
262,562 - MIT1002_00234 0.18 +0.3
262,562 - MIT1002_00234 0.18 -0.1
262,636 + MIT1002_00234 0.23 +0.3
262,636 + MIT1002_00234 0.23 +2.2
262,644 - MIT1002_00234 0.23 +2.7
262,653 + MIT1002_00234 0.24 +1.1
262,702 - MIT1002_00234 0.27 +1.4
262,761 + MIT1002_00234 0.30 -0.6
262,769 - MIT1002_00234 0.31 +1.9
262,779 - MIT1002_00234 0.31 -0.9
262,789 - MIT1002_00234 0.32 +0.3
262,797 + MIT1002_00234 0.32 +0.8
262,858 + MIT1002_00234 0.36 -0.7
262,906 + MIT1002_00234 0.39 +1.2
262,914 - MIT1002_00234 0.39 -0.4
262,924 - MIT1002_00234 0.40 +0.4
262,942 + MIT1002_00234 0.41 +0.1
262,942 + MIT1002_00234 0.41 +0.4
262,942 + MIT1002_00234 0.41 -0.8
262,942 + MIT1002_00234 0.41 -0.0
262,943 + MIT1002_00234 0.41 -0.3
262,943 + MIT1002_00234 0.41 +1.1
262,950 - MIT1002_00234 0.42 -0.3
262,950 - MIT1002_00234 0.42 +0.5
262,950 - MIT1002_00234 0.42 +2.3
262,950 - MIT1002_00234 0.42 -0.3
262,951 - MIT1002_00234 0.42 +1.8
263,075 - MIT1002_00234 0.49 -0.3
263,090 - MIT1002_00234 0.50 +3.4

Or see this region's nucleotide sequence