Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00224

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00222 and MIT1002_00223 are separated by 36 nucleotidesMIT1002_00223 and MIT1002_00224 overlap by 4 nucleotidesMIT1002_00224 and MIT1002_00225 are separated by 26 nucleotides MIT1002_00222: MIT1002_00222 - Rod shape-determining protein MreD, at 245,777 to 246,253 _00222 MIT1002_00223: MIT1002_00223 - Maf-like protein YhdE, at 246,290 to 246,895 _00223 MIT1002_00224: MIT1002_00224 - Ribonuclease G, at 246,892 to 248,358 _00224 MIT1002_00225: MIT1002_00225 - putative protein involved in outer membrane biogenesis, at 248,385 to 252,380 _00225 Position (kb) 246 247 248 249Strain fitness (log2 ratio) -2 -1 0 1 2 3at 246.191 kb on - strand, within MIT1002_00222at 246.313 kb on - strandat 246.363 kb on + strand, within MIT1002_00223at 246.363 kb on + strand, within MIT1002_00223at 246.395 kb on + strand, within MIT1002_00223at 246.431 kb on + strand, within MIT1002_00223at 246.469 kb on + strand, within MIT1002_00223at 246.501 kb on + strand, within MIT1002_00223at 246.509 kb on - strand, within MIT1002_00223at 246.522 kb on + strand, within MIT1002_00223at 246.665 kb on + strand, within MIT1002_00223at 246.729 kb on + strand, within MIT1002_00223at 246.749 kb on + strand, within MIT1002_00223at 246.762 kb on - strand, within MIT1002_00223at 246.772 kb on - strand, within MIT1002_00223at 246.772 kb on - strand, within MIT1002_00223at 246.776 kb on + strand, within MIT1002_00223at 246.806 kb on + strand, within MIT1002_00223at 246.807 kb on + strand, within MIT1002_00223at 246.825 kb on + strand, within MIT1002_00223at 246.861 kb on + strandat 246.869 kb on - strandat 246.869 kb on - strandat 246.896 kb on + strandat 246.904 kb on - strandat 246.954 kb on - strandat 247.203 kb on + strand, within MIT1002_00224at 247.238 kb on + strand, within MIT1002_00224at 247.245 kb on + strand, within MIT1002_00224at 247.245 kb on + strand, within MIT1002_00224at 247.253 kb on - strand, within MIT1002_00224at 247.272 kb on - strand, within MIT1002_00224at 247.292 kb on - strand, within MIT1002_00224at 247.562 kb on + strand, within MIT1002_00224at 247.800 kb on + strand, within MIT1002_00224at 247.822 kb on - strand, within MIT1002_00224at 247.966 kb on + strand, within MIT1002_00224at 247.976 kb on + strand, within MIT1002_00224at 247.976 kb on + strand, within MIT1002_00224at 247.976 kb on + strand, within MIT1002_00224at 247.984 kb on - strand, within MIT1002_00224at 247.984 kb on - strand, within MIT1002_00224at 247.984 kb on - strand, within MIT1002_00224at 248.024 kb on + strand, within MIT1002_00224at 248.076 kb on - strand, within MIT1002_00224at 248.091 kb on + strand, within MIT1002_00224at 248.116 kb on + strand, within MIT1002_00224at 248.116 kb on + strand, within MIT1002_00224at 248.136 kb on - strand, within MIT1002_00224at 248.247 kb on - strandat 248.368 kb on - strandat 248.469 kb on + strandat 248.487 kb on - strandat 248.520 kb on - strandat 248.551 kb on + strandat 248.589 kb on - strandat 248.610 kb on + strandat 248.680 kb on - strandat 248.739 kb on - strandat 248.739 kb on - strandat 248.741 kb on + strandat 248.746 kb on + strandat 248.814 kb on + strand, within MIT1002_00225at 248.815 kb on + strand, within MIT1002_00225at 248.823 kb on - strand, within MIT1002_00225at 248.840 kb on + strand, within MIT1002_00225at 248.883 kb on - strand, within MIT1002_00225at 248.951 kb on + strand, within MIT1002_00225at 248.959 kb on - strand, within MIT1002_00225at 248.963 kb on + strand, within MIT1002_00225at 248.963 kb on + strand, within MIT1002_00225at 248.963 kb on + strand, within MIT1002_00225at 248.971 kb on - strand, within MIT1002_00225at 248.971 kb on - strand, within MIT1002_00225at 248.976 kb on + strand, within MIT1002_00225at 249.040 kb on - strand, within MIT1002_00225at 249.063 kb on - strand, within MIT1002_00225at 249.065 kb on + strand, within MIT1002_00225at 249.117 kb on + strand, within MIT1002_00225at 249.172 kb on + strand, within MIT1002_00225at 249.189 kb on - strand, within MIT1002_00225at 249.284 kb on - strand, within MIT1002_00225at 249.344 kb on + strand, within MIT1002_00225at 249.344 kb on + strand, within MIT1002_00225at 249.352 kb on - strand, within MIT1002_00225at 249.352 kb on - strand, within MIT1002_00225at 249.352 kb on - strand, within MIT1002_00225at 249.352 kb on - strand, within MIT1002_00225at 249.352 kb on - strand, within MIT1002_00225

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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246,191 - MIT1002_00222 0.87 -1.8
246,313 - +0.1
246,363 + MIT1002_00223 0.12 -0.6
246,363 + MIT1002_00223 0.12 -1.1
246,395 + MIT1002_00223 0.17 -0.8
246,431 + MIT1002_00223 0.23 +0.2
246,469 + MIT1002_00223 0.30 -0.2
246,501 + MIT1002_00223 0.35 -1.5
246,509 - MIT1002_00223 0.36 -1.6
246,522 + MIT1002_00223 0.38 +0.0
246,665 + MIT1002_00223 0.62 -0.4
246,729 + MIT1002_00223 0.72 -2.2
246,749 + MIT1002_00223 0.76 +0.7
246,762 - MIT1002_00223 0.78 -2.3
246,772 - MIT1002_00223 0.80 -1.4
246,772 - MIT1002_00223 0.80 -0.3
246,776 + MIT1002_00223 0.80 -0.2
246,806 + MIT1002_00223 0.85 +0.5
246,807 + MIT1002_00223 0.85 -0.7
246,825 + MIT1002_00223 0.88 +1.4
246,861 + +2.1
246,869 - -1.0
246,869 - -1.2
246,896 + -1.3
246,904 - +0.7
246,954 - -0.1
247,203 + MIT1002_00224 0.21 -1.9
247,238 + MIT1002_00224 0.24 -0.1
247,245 + MIT1002_00224 0.24 +0.4
247,245 + MIT1002_00224 0.24 -1.1
247,253 - MIT1002_00224 0.25 +0.4
247,272 - MIT1002_00224 0.26 -1.2
247,292 - MIT1002_00224 0.27 -0.1
247,562 + MIT1002_00224 0.46 +0.8
247,800 + MIT1002_00224 0.62 -2.6
247,822 - MIT1002_00224 0.63 -1.6
247,966 + MIT1002_00224 0.73 -1.1
247,976 + MIT1002_00224 0.74 -1.3
247,976 + MIT1002_00224 0.74 +0.3
247,976 + MIT1002_00224 0.74 -1.3
247,984 - MIT1002_00224 0.74 -1.5
247,984 - MIT1002_00224 0.74 +1.1
247,984 - MIT1002_00224 0.74 -0.1
248,024 + MIT1002_00224 0.77 -0.3
248,076 - MIT1002_00224 0.81 -1.6
248,091 + MIT1002_00224 0.82 -2.1
248,116 + MIT1002_00224 0.83 -2.3
248,116 + MIT1002_00224 0.83 -1.1
248,136 - MIT1002_00224 0.85 +1.5
248,247 - -1.0
248,368 - -0.8
248,469 + +3.0
248,487 - -0.2
248,520 - -0.4
248,551 + +0.1
248,589 - -1.1
248,610 + -0.1
248,680 - -1.4
248,739 - +0.7
248,739 - +0.8
248,741 + +0.2
248,746 + +1.1
248,814 + MIT1002_00225 0.11 +0.7
248,815 + MIT1002_00225 0.11 -1.1
248,823 - MIT1002_00225 0.11 +0.1
248,840 + MIT1002_00225 0.11 -0.8
248,883 - MIT1002_00225 0.12 -1.5
248,951 + MIT1002_00225 0.14 -0.1
248,959 - MIT1002_00225 0.14 +0.5
248,963 + MIT1002_00225 0.14 +0.7
248,963 + MIT1002_00225 0.14 -0.8
248,963 + MIT1002_00225 0.14 +0.0
248,971 - MIT1002_00225 0.15 +0.0
248,971 - MIT1002_00225 0.15 -0.4
248,976 + MIT1002_00225 0.15 -0.9
249,040 - MIT1002_00225 0.16 +0.3
249,063 - MIT1002_00225 0.17 -0.8
249,065 + MIT1002_00225 0.17 -1.2
249,117 + MIT1002_00225 0.18 -0.7
249,172 + MIT1002_00225 0.20 -1.2
249,189 - MIT1002_00225 0.20 -0.3
249,284 - MIT1002_00225 0.22 -0.8
249,344 + MIT1002_00225 0.24 -0.0
249,344 + MIT1002_00225 0.24 -0.4
249,352 - MIT1002_00225 0.24 -0.6
249,352 - MIT1002_00225 0.24 -0.5
249,352 - MIT1002_00225 0.24 -0.8
249,352 - MIT1002_00225 0.24 -1.3
249,352 - MIT1002_00225 0.24 -1.1

Or see this region's nucleotide sequence