Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00118

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00117 and MIT1002_00118 are separated by 2 nucleotidesMIT1002_00118 and MIT1002_00119 are separated by 114 nucleotides MIT1002_00117: MIT1002_00117 - Maltose/maltodextrin import ATP-binding protein MalK, at 126,524 to 127,555 _00117 MIT1002_00118: MIT1002_00118 - N-methyltryptophan oxidase, at 127,558 to 128,739 _00118 MIT1002_00119: MIT1002_00119 - Abortive infection bacteriophage resistance protein, at 128,854 to 129,882 _00119 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 126.934 kb on + strand, within MIT1002_00117at 127.037 kb on + strand, within MIT1002_00117at 127.152 kb on + strand, within MIT1002_00117at 127.160 kb on - strand, within MIT1002_00117at 127.359 kb on + strand, within MIT1002_00117at 127.433 kb on + strand, within MIT1002_00117at 127.558 kb on - strandat 127.571 kb on + strandat 127.615 kb on + strandat 127.623 kb on - strandat 127.623 kb on - strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.640 kb on + strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.648 kb on - strandat 127.719 kb on + strand, within MIT1002_00118at 127.719 kb on + strand, within MIT1002_00118at 127.719 kb on + strand, within MIT1002_00118at 127.727 kb on - strand, within MIT1002_00118at 127.782 kb on - strand, within MIT1002_00118at 127.784 kb on + strand, within MIT1002_00118at 127.826 kb on + strand, within MIT1002_00118at 127.847 kb on + strand, within MIT1002_00118at 127.855 kb on - strand, within MIT1002_00118at 127.937 kb on - strand, within MIT1002_00118at 127.947 kb on + strand, within MIT1002_00118at 128.004 kb on + strand, within MIT1002_00118at 128.048 kb on + strand, within MIT1002_00118at 128.055 kb on + strand, within MIT1002_00118at 128.131 kb on - strand, within MIT1002_00118at 128.131 kb on - strand, within MIT1002_00118at 128.155 kb on + strand, within MIT1002_00118at 128.175 kb on + strand, within MIT1002_00118at 128.183 kb on - strand, within MIT1002_00118at 128.183 kb on - strand, within MIT1002_00118at 128.262 kb on - strand, within MIT1002_00118at 128.264 kb on + strand, within MIT1002_00118at 128.272 kb on - strand, within MIT1002_00118at 128.272 kb on - strand, within MIT1002_00118at 128.299 kb on - strand, within MIT1002_00118at 128.423 kb on + strand, within MIT1002_00118at 128.428 kb on + strand, within MIT1002_00118at 128.428 kb on + strand, within MIT1002_00118at 128.428 kb on + strand, within MIT1002_00118at 128.435 kb on + strand, within MIT1002_00118at 128.436 kb on - strand, within MIT1002_00118at 128.436 kb on - strand, within MIT1002_00118at 128.436 kb on - strand, within MIT1002_00118at 128.443 kb on - strand, within MIT1002_00118at 128.443 kb on - strand, within MIT1002_00118at 128.445 kb on + strand, within MIT1002_00118at 128.493 kb on + strand, within MIT1002_00118at 128.513 kb on + strand, within MIT1002_00118at 128.579 kb on - strand, within MIT1002_00118at 128.606 kb on - strand, within MIT1002_00118at 128.635 kb on + strandat 128.635 kb on + strandat 128.635 kb on + strandat 128.643 kb on - strandat 128.699 kb on - strandat 128.797 kb on + strandat 128.825 kb on + strandat 128.926 kb on + strandat 128.927 kb on + strandat 128.935 kb on - strandat 128.969 kb on + strand, within MIT1002_00119at 128.969 kb on + strand, within MIT1002_00119at 128.969 kb on + strand, within MIT1002_00119at 129.037 kb on - strand, within MIT1002_00119at 129.045 kb on + strand, within MIT1002_00119at 129.045 kb on + strand, within MIT1002_00119at 129.045 kb on + strand, within MIT1002_00119at 129.045 kb on + strand, within MIT1002_00119at 129.053 kb on - strand, within MIT1002_00119at 129.053 kb on - strand, within MIT1002_00119at 129.058 kb on - strand, within MIT1002_00119at 129.099 kb on - strand, within MIT1002_00119at 129.132 kb on - strand, within MIT1002_00119at 129.172 kb on + strand, within MIT1002_00119at 129.191 kb on - strand, within MIT1002_00119at 129.260 kb on + strand, within MIT1002_00119at 129.479 kb on + strand, within MIT1002_00119at 129.479 kb on + strand, within MIT1002_00119at 129.497 kb on - strand, within MIT1002_00119at 129.528 kb on - strand, within MIT1002_00119at 129.572 kb on + strand, within MIT1002_00119at 129.577 kb on + strand, within MIT1002_00119at 129.580 kb on - strand, within MIT1002_00119at 129.660 kb on + strand, within MIT1002_00119at 129.661 kb on - strand, within MIT1002_00119

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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126,934 + MIT1002_00117 0.40 +0.1
127,037 + MIT1002_00117 0.50 -1.1
127,152 + MIT1002_00117 0.61 +0.4
127,160 - MIT1002_00117 0.62 -1.1
127,359 + MIT1002_00117 0.81 -1.1
127,433 + MIT1002_00117 0.88 +0.1
127,558 - -0.4
127,571 + +0.6
127,615 + +1.3
127,623 - +0.2
127,623 - -0.3
127,640 + -0.5
127,640 + -0.5
127,640 + -0.9
127,640 + -0.1
127,640 + +0.5
127,640 + +0.7
127,640 + -2.5
127,640 + -1.2
127,640 + -0.7
127,640 + -2.0
127,640 + +0.1
127,640 + +0.5
127,640 + +1.2
127,640 + +0.1
127,640 + -0.9
127,640 + +0.4
127,640 + -1.8
127,640 + -1.9
127,640 + +0.4
127,640 + -1.1
127,640 + +0.7
127,640 + -0.6
127,640 + -0.6
127,640 + -2.0
127,640 + -0.8
127,640 + +1.6
127,640 + +0.5
127,640 + +0.6
127,640 + -0.9
127,648 - +0.5
127,648 - +0.8
127,648 - -0.2
127,648 - -1.1
127,648 - -1.8
127,648 - -0.6
127,648 - -0.3
127,648 - -0.1
127,648 - +0.6
127,648 - +0.3
127,648 - +1.4
127,648 - -2.3
127,648 - -0.4
127,648 - +0.5
127,648 - -0.0
127,648 - +0.0
127,648 - +0.1
127,648 - +0.8
127,648 - +0.7
127,648 - +0.5
127,648 - +0.1
127,648 - -0.7
127,648 - +0.1
127,648 - +1.0
127,648 - -0.5
127,648 - -1.3
127,648 - -0.1
127,719 + MIT1002_00118 0.14 +0.3
127,719 + MIT1002_00118 0.14 -0.5
127,719 + MIT1002_00118 0.14 -0.5
127,727 - MIT1002_00118 0.14 -0.4
127,782 - MIT1002_00118 0.19 +1.5
127,784 + MIT1002_00118 0.19 +0.8
127,826 + MIT1002_00118 0.23 +1.0
127,847 + MIT1002_00118 0.24 -1.2
127,855 - MIT1002_00118 0.25 -0.9
127,937 - MIT1002_00118 0.32 -2.6
127,947 + MIT1002_00118 0.33 -1.8
128,004 + MIT1002_00118 0.38 +0.9
128,048 + MIT1002_00118 0.41 -2.8
128,055 + MIT1002_00118 0.42 -0.6
128,131 - MIT1002_00118 0.48 +1.4
128,131 - MIT1002_00118 0.48 +0.0
128,155 + MIT1002_00118 0.51 -0.8
128,175 + MIT1002_00118 0.52 +0.1
128,183 - MIT1002_00118 0.53 +0.4
128,183 - MIT1002_00118 0.53 +1.0
128,262 - MIT1002_00118 0.60 +0.3
128,264 + MIT1002_00118 0.60 -0.0
128,272 - MIT1002_00118 0.60 +0.5
128,272 - MIT1002_00118 0.60 +1.4
128,299 - MIT1002_00118 0.63 +2.0
128,423 + MIT1002_00118 0.73 -0.5
128,428 + MIT1002_00118 0.74 +0.8
128,428 + MIT1002_00118 0.74 +0.6
128,428 + MIT1002_00118 0.74 -0.5
128,435 + MIT1002_00118 0.74 +0.5
128,436 - MIT1002_00118 0.74 -0.1
128,436 - MIT1002_00118 0.74 +0.1
128,436 - MIT1002_00118 0.74 +1.1
128,443 - MIT1002_00118 0.75 +0.7
128,443 - MIT1002_00118 0.75 +0.5
128,445 + MIT1002_00118 0.75 +0.2
128,493 + MIT1002_00118 0.79 -0.8
128,513 + MIT1002_00118 0.81 -0.5
128,579 - MIT1002_00118 0.86 -0.2
128,606 - MIT1002_00118 0.89 +0.1
128,635 + +0.6
128,635 + -0.4
128,635 + +0.1
128,643 - -0.6
128,699 - -0.2
128,797 + -0.1
128,825 + -1.1
128,926 + -1.5
128,927 + +0.0
128,935 - +1.6
128,969 + MIT1002_00119 0.11 +0.5
128,969 + MIT1002_00119 0.11 +0.3
128,969 + MIT1002_00119 0.11 +0.8
129,037 - MIT1002_00119 0.18 -0.5
129,045 + MIT1002_00119 0.19 -1.4
129,045 + MIT1002_00119 0.19 -1.5
129,045 + MIT1002_00119 0.19 -0.9
129,045 + MIT1002_00119 0.19 +0.8
129,053 - MIT1002_00119 0.19 -0.5
129,053 - MIT1002_00119 0.19 +0.3
129,058 - MIT1002_00119 0.20 -2.0
129,099 - MIT1002_00119 0.24 -1.5
129,132 - MIT1002_00119 0.27 +0.1
129,172 + MIT1002_00119 0.31 +2.3
129,191 - MIT1002_00119 0.33 +0.1
129,260 + MIT1002_00119 0.39 +1.1
129,479 + MIT1002_00119 0.61 +1.1
129,479 + MIT1002_00119 0.61 -0.1
129,497 - MIT1002_00119 0.62 -1.0
129,528 - MIT1002_00119 0.66 -1.7
129,572 + MIT1002_00119 0.70 -0.4
129,577 + MIT1002_00119 0.70 -1.0
129,580 - MIT1002_00119 0.71 +0.1
129,660 + MIT1002_00119 0.78 -0.1
129,661 - MIT1002_00119 0.78 -0.5

Or see this region's nucleotide sequence