Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00114

Experiment: monoculture; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment B, time point 2
122,158	+		MIT1002_00112	0.89	-1.8
122,159	-		MIT1002_00112	0.90	-0.1
122,159	-		MIT1002_00112	0.90	+0.7
122,159	-		MIT1002_00112	0.90	-1.4
122,179	-				-1.0
122,356	+		MIT1002_00113	0.23	-1.4
122,364	-		MIT1002_00113	0.24	-2.6
122,374	-		MIT1002_00113	0.26	-1.9
122,388	+		MIT1002_00113	0.29	-2.2
122,412	+		MIT1002_00113	0.34	-3.0
122,447	+		MIT1002_00113	0.42	-3.1
122,503	+		MIT1002_00113	0.54	-3.9
122,587	-		MIT1002_00113	0.71	-1.6
122,603	+		MIT1002_00113	0.75	-3.5
122,617	+		MIT1002_00113	0.78	-1.9
122,622	+		MIT1002_00113	0.79	-2.7
122,622	+		MIT1002_00113	0.79	-2.4
122,622	+		MIT1002_00113	0.79	-1.3
122,630	-		MIT1002_00113	0.80	+1.0
122,630	-		MIT1002_00113	0.80	-2.3
122,724	-				-0.8
122,762	-				+0.1
122,850	-				-0.7
122,857	+				+0.8
122,865	-				+0.2
122,903	+				-1.7
122,947	-				-0.1
122,988	+				-0.8
123,047	+				+1.0
123,214	+				-0.7
123,298	+		MIT1002_00114	0.18	-0.9
123,301	+		MIT1002_00114	0.18	-1.9
123,306	-		MIT1002_00114	0.19	+0.7
123,528	-		MIT1002_00114	0.46	-0.6
123,827	-		MIT1002_00114	0.83	+0.1
123,905	-				+0.1
123,905	-				+0.4
123,922	+				-0.1
123,968	+				-1.0
123,968	+				-0.9
124,324	+		MIT1002_00115	0.34	-1.0
124,332	-		MIT1002_00115	0.35	-0.9
124,645	-		MIT1002_00115	0.65	-0.5
124,687	-		MIT1002_00115	0.69	-0.6