Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00094

Experiment: monoculture; Experiment B, time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00092 and MIT1002_00093 overlap by 4 nucleotidesMIT1002_00093 and MIT1002_00094 are separated by 1 nucleotidesMIT1002_00094 and MIT1002_00095 overlap by 4 nucleotidesMIT1002_00095 and MIT1002_00096 overlap by 8 nucleotides MIT1002_00092: MIT1002_00092 - 2-iminoacetate synthase, at 100,093 to 101,226 _00092 MIT1002_00093: MIT1002_00093 - Thiazole synthase, at 101,223 to 101,993 _00093 MIT1002_00094: MIT1002_00094 - sulfur carrier protein ThiS, at 101,995 to 102,204 _00094 MIT1002_00095: MIT1002_00095 - Molybdopterin-synthase adenylyltransferase, at 102,201 to 102,995 _00095 MIT1002_00096: MIT1002_00096 - Thiamine-phosphate synthase, at 102,988 to 104,589 _00096 Position (kb) 101 102 103Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 101.005 kb on - strand, within MIT1002_00092at 101.042 kb on + strand, within MIT1002_00092at 101.092 kb on + strand, within MIT1002_00092at 101.100 kb on - strand, within MIT1002_00092at 101.139 kb on - strandat 101.150 kb on - strandat 101.197 kb on - strandat 101.220 kb on + strandat 101.255 kb on + strandat 101.255 kb on + strandat 101.380 kb on + strand, within MIT1002_00093at 101.441 kb on - strand, within MIT1002_00093at 101.514 kb on + strand, within MIT1002_00093at 101.522 kb on - strand, within MIT1002_00093at 101.522 kb on - strand, within MIT1002_00093at 101.570 kb on + strand, within MIT1002_00093at 101.578 kb on - strand, within MIT1002_00093at 101.602 kb on - strand, within MIT1002_00093at 101.663 kb on + strand, within MIT1002_00093at 101.685 kb on + strand, within MIT1002_00093at 101.693 kb on - strand, within MIT1002_00093at 101.693 kb on - strand, within MIT1002_00093at 101.693 kb on - strand, within MIT1002_00093at 101.724 kb on + strand, within MIT1002_00093at 101.724 kb on + strand, within MIT1002_00093at 101.727 kb on - strand, within MIT1002_00093at 101.727 kb on - strand, within MIT1002_00093at 101.732 kb on - strand, within MIT1002_00093at 101.732 kb on - strand, within MIT1002_00093at 101.732 kb on - strand, within MIT1002_00093at 101.754 kb on + strand, within MIT1002_00093at 101.889 kb on + strand, within MIT1002_00093at 101.889 kb on + strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.897 kb on - strand, within MIT1002_00093at 101.903 kb on + strand, within MIT1002_00093at 101.903 kb on + strand, within MIT1002_00093at 101.911 kb on - strand, within MIT1002_00093at 101.911 kb on - strand, within MIT1002_00093at 101.911 kb on - strand, within MIT1002_00093at 101.928 kb on - strandat 101.965 kb on - strandat 101.970 kb on + strandat 101.978 kb on - strandat 102.083 kb on - strand, within MIT1002_00094at 102.255 kb on + strandat 102.255 kb on + strandat 102.255 kb on + strandat 102.263 kb on + strandat 102.263 kb on - strandat 102.263 kb on - strandat 102.265 kb on + strandat 102.284 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.330 kb on + strand, within MIT1002_00095at 102.338 kb on - strand, within MIT1002_00095at 102.338 kb on - strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.360 kb on + strand, within MIT1002_00095at 102.375 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.465 kb on + strand, within MIT1002_00095at 102.473 kb on - strand, within MIT1002_00095at 102.473 kb on - strand, within MIT1002_00095at 102.512 kb on + strand, within MIT1002_00095at 102.556 kb on + strand, within MIT1002_00095at 102.562 kb on - strand, within MIT1002_00095at 102.568 kb on + strand, within MIT1002_00095at 102.568 kb on + strand, within MIT1002_00095at 102.576 kb on - strand, within MIT1002_00095at 102.581 kb on - strand, within MIT1002_00095at 102.674 kb on + strand, within MIT1002_00095at 102.677 kb on - strand, within MIT1002_00095at 102.682 kb on - strand, within MIT1002_00095at 102.719 kb on + strand, within MIT1002_00095at 102.776 kb on + strand, within MIT1002_00095at 102.784 kb on - strand, within MIT1002_00095at 102.786 kb on + strand, within MIT1002_00095at 102.799 kb on - strand, within MIT1002_00095at 102.863 kb on - strand, within MIT1002_00095at 102.868 kb on + strand, within MIT1002_00095at 102.868 kb on + strand, within MIT1002_00095at 102.876 kb on - strand, within MIT1002_00095at 102.882 kb on + strand, within MIT1002_00095at 102.882 kb on + strand, within MIT1002_00095at 102.974 kb on - strandat 102.998 kb on - strandat 103.043 kb on - strandat 103.058 kb on - strandat 103.060 kb on + strandat 103.133 kb on + strandat 103.176 kb on + strand, within MIT1002_00096at 103.192 kb on + strand, within MIT1002_00096at 103.192 kb on - strand, within MIT1002_00096at 103.192 kb on - strand, within MIT1002_00096

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
remove
101,005 - MIT1002_00092 0.80 -4.4
101,042 + MIT1002_00092 0.84 -1.6
101,092 + MIT1002_00092 0.88 -1.2
101,100 - MIT1002_00092 0.89 -3.8
101,139 - -3.0
101,150 - -4.3
101,197 - -1.2
101,220 + -3.2
101,255 + -2.5
101,255 + -2.9
101,380 + MIT1002_00093 0.20 -2.5
101,441 - MIT1002_00093 0.28 -2.5
101,514 + MIT1002_00093 0.38 -1.9
101,522 - MIT1002_00093 0.39 -2.7
101,522 - MIT1002_00093 0.39 -3.9
101,570 + MIT1002_00093 0.45 -1.7
101,578 - MIT1002_00093 0.46 -2.1
101,602 - MIT1002_00093 0.49 -1.5
101,663 + MIT1002_00093 0.57 -3.9
101,685 + MIT1002_00093 0.60 -2.4
101,693 - MIT1002_00093 0.61 -0.6
101,693 - MIT1002_00093 0.61 -3.2
101,693 - MIT1002_00093 0.61 -4.1
101,724 + MIT1002_00093 0.65 -2.6
101,724 + MIT1002_00093 0.65 -2.6
101,727 - MIT1002_00093 0.65 -0.7
101,727 - MIT1002_00093 0.65 -0.6
101,732 - MIT1002_00093 0.66 +0.1
101,732 - MIT1002_00093 0.66 -1.4
101,732 - MIT1002_00093 0.66 -3.7
101,754 + MIT1002_00093 0.69 -3.4
101,889 + MIT1002_00093 0.86 -1.6
101,889 + MIT1002_00093 0.86 -3.3
101,897 - MIT1002_00093 0.87 +0.1
101,897 - MIT1002_00093 0.87 -2.4
101,897 - MIT1002_00093 0.87 -0.6
101,897 - MIT1002_00093 0.87 -4.5
101,903 + MIT1002_00093 0.88 -2.2
101,903 + MIT1002_00093 0.88 -2.8
101,911 - MIT1002_00093 0.89 -1.4
101,911 - MIT1002_00093 0.89 -1.9
101,911 - MIT1002_00093 0.89 -3.5
101,928 - -3.3
101,965 - -3.6
101,970 + +0.7
101,978 - -5.8
102,083 - MIT1002_00094 0.42 -2.8
102,255 + -3.8
102,255 + -1.5
102,255 + -1.9
102,263 + -2.7
102,263 - -1.0
102,263 - -2.2
102,265 + -0.5
102,284 + MIT1002_00095 0.10 +0.7
102,330 + MIT1002_00095 0.16 -2.1
102,330 + MIT1002_00095 0.16 -3.5
102,330 + MIT1002_00095 0.16 -4.0
102,338 - MIT1002_00095 0.17 -2.5
102,338 - MIT1002_00095 0.17 -2.0
102,360 + MIT1002_00095 0.20 -1.3
102,360 + MIT1002_00095 0.20 -4.2
102,360 + MIT1002_00095 0.20 +0.1
102,375 + MIT1002_00095 0.22 -2.7
102,465 + MIT1002_00095 0.33 -2.9
102,465 + MIT1002_00095 0.33 -1.9
102,465 + MIT1002_00095 0.33 -1.6
102,465 + MIT1002_00095 0.33 -2.6
102,465 + MIT1002_00095 0.33 -2.4
102,473 - MIT1002_00095 0.34 -2.5
102,473 - MIT1002_00095 0.34 -4.6
102,512 + MIT1002_00095 0.39 -2.7
102,556 + MIT1002_00095 0.45 -2.4
102,562 - MIT1002_00095 0.45 -1.3
102,568 + MIT1002_00095 0.46 -2.7
102,568 + MIT1002_00095 0.46 -2.2
102,576 - MIT1002_00095 0.47 -2.2
102,581 - MIT1002_00095 0.48 -2.2
102,674 + MIT1002_00095 0.59 -2.0
102,677 - MIT1002_00095 0.60 -2.1
102,682 - MIT1002_00095 0.61 -1.3
102,719 + MIT1002_00095 0.65 -0.3
102,776 + MIT1002_00095 0.72 -3.5
102,784 - MIT1002_00095 0.73 -1.7
102,786 + MIT1002_00095 0.74 -3.0
102,799 - MIT1002_00095 0.75 -1.9
102,863 - MIT1002_00095 0.83 -0.6
102,868 + MIT1002_00095 0.84 -0.9
102,868 + MIT1002_00095 0.84 -2.8
102,876 - MIT1002_00095 0.85 -0.7
102,882 + MIT1002_00095 0.86 -1.4
102,882 + MIT1002_00095 0.86 -1.3
102,974 - -1.9
102,998 - -4.4
103,043 - +0.7
103,058 - -2.5
103,060 + -3.1
103,133 + -1.8
103,176 + MIT1002_00096 0.12 -3.8
103,192 + MIT1002_00096 0.13 -2.5
103,192 - MIT1002_00096 0.13 -2.7
103,192 - MIT1002_00096 0.13 +0.1

Or see this region's nucleotide sequence