Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00076

Experiment: monoculture; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00075 and MIT1002_00076 overlap by 11 nucleotidesMIT1002_00076 and MIT1002_00077 are separated by 300 nucleotides MIT1002_00075: MIT1002_00075 - putative DNA-binding transcriptional regulator, at 80,425 to 81,618 _00075 MIT1002_00076: MIT1002_00076 - transcriptional regulator, y4mF family, at 81,608 to 81,898 _00076 MIT1002_00077: MIT1002_00077 - Malate-2H(+)/Na(+)-lactate antiporter, at 82,199 to 83,611 _00077 Position (kb) 81 82Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 80.659 kb on + strand, within MIT1002_00075at 80.659 kb on + strand, within MIT1002_00075at 80.665 kb on - strand, within MIT1002_00075at 80.735 kb on - strand, within MIT1002_00075at 80.735 kb on - strand, within MIT1002_00075at 80.743 kb on - strand, within MIT1002_00075at 80.765 kb on + strand, within MIT1002_00075at 80.765 kb on + strand, within MIT1002_00075at 80.773 kb on - strand, within MIT1002_00075at 80.783 kb on - strand, within MIT1002_00075at 80.801 kb on - strand, within MIT1002_00075at 80.801 kb on - strand, within MIT1002_00075at 80.809 kb on - strand, within MIT1002_00075at 80.853 kb on + strand, within MIT1002_00075at 80.976 kb on + strand, within MIT1002_00075at 80.976 kb on + strand, within MIT1002_00075at 80.976 kb on + strand, within MIT1002_00075at 80.984 kb on - strand, within MIT1002_00075at 80.984 kb on - strand, within MIT1002_00075at 80.984 kb on - strand, within MIT1002_00075at 81.002 kb on - strand, within MIT1002_00075at 81.052 kb on + strand, within MIT1002_00075at 81.060 kb on + strand, within MIT1002_00075at 81.078 kb on - strand, within MIT1002_00075at 81.121 kb on - strand, within MIT1002_00075at 81.131 kb on + strand, within MIT1002_00075at 81.181 kb on - strand, within MIT1002_00075at 81.242 kb on - strand, within MIT1002_00075at 81.266 kb on + strand, within MIT1002_00075at 81.291 kb on + strand, within MIT1002_00075at 81.303 kb on + strand, within MIT1002_00075at 81.305 kb on - strand, within MIT1002_00075at 81.311 kb on - strand, within MIT1002_00075at 81.311 kb on - strand, within MIT1002_00075at 81.342 kb on + strand, within MIT1002_00075at 81.350 kb on - strand, within MIT1002_00075at 81.397 kb on + strand, within MIT1002_00075at 81.423 kb on + strand, within MIT1002_00075at 81.470 kb on + strand, within MIT1002_00075at 81.486 kb on + strand, within MIT1002_00075at 81.598 kb on + strandat 81.606 kb on + strandat 81.606 kb on + strandat 81.659 kb on + strand, within MIT1002_00076at 81.769 kb on + strand, within MIT1002_00076at 81.811 kb on + strand, within MIT1002_00076at 81.812 kb on + strand, within MIT1002_00076at 81.820 kb on + strand, within MIT1002_00076at 81.829 kb on + strand, within MIT1002_00076at 82.032 kb on + strandat 82.045 kb on + strandat 82.045 kb on + strandat 82.102 kb on + strandat 82.102 kb on + strandat 82.102 kb on + strandat 82.102 kb on + strandat 82.102 kb on + strandat 82.102 kb on + strandat 82.107 kb on + strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.110 kb on - strandat 82.117 kb on + strandat 82.235 kb on - strandat 82.296 kb on + strandat 82.310 kb on - strandat 82.369 kb on - strand, within MIT1002_00077at 82.408 kb on - strand, within MIT1002_00077at 82.413 kb on - strand, within MIT1002_00077at 82.413 kb on - strand, within MIT1002_00077at 82.445 kb on + strand, within MIT1002_00077at 82.512 kb on + strand, within MIT1002_00077at 82.527 kb on - strand, within MIT1002_00077at 82.569 kb on - strand, within MIT1002_00077at 82.572 kb on + strand, within MIT1002_00077at 82.610 kb on - strand, within MIT1002_00077at 82.613 kb on + strand, within MIT1002_00077at 82.616 kb on - strand, within MIT1002_00077at 82.616 kb on - strand, within MIT1002_00077at 82.634 kb on + strand, within MIT1002_00077at 82.634 kb on + strand, within MIT1002_00077at 82.634 kb on + strand, within MIT1002_00077at 82.642 kb on - strand, within MIT1002_00077at 82.642 kb on - strand, within MIT1002_00077at 82.642 kb on - strand, within MIT1002_00077at 82.642 kb on - strand, within MIT1002_00077at 82.647 kb on - strand, within MIT1002_00077at 82.678 kb on - strand, within MIT1002_00077at 82.780 kb on + strand, within MIT1002_00077at 82.792 kb on + strand, within MIT1002_00077at 82.792 kb on + strand, within MIT1002_00077at 82.792 kb on + strand, within MIT1002_00077at 82.792 kb on + strand, within MIT1002_00077at 82.797 kb on + strand, within MIT1002_00077at 82.800 kb on - strand, within MIT1002_00077at 82.800 kb on - strand, within MIT1002_00077at 82.800 kb on - strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.805 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 2
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80,659 + MIT1002_00075 0.20 -0.5
80,659 + MIT1002_00075 0.20 -0.7
80,665 - MIT1002_00075 0.20 -1.5
80,735 - MIT1002_00075 0.26 -0.6
80,735 - MIT1002_00075 0.26 +2.0
80,743 - MIT1002_00075 0.27 +1.0
80,765 + MIT1002_00075 0.28 -0.5
80,765 + MIT1002_00075 0.28 +0.2
80,773 - MIT1002_00075 0.29 -0.8
80,783 - MIT1002_00075 0.30 +0.8
80,801 - MIT1002_00075 0.31 +0.1
80,801 - MIT1002_00075 0.31 -0.4
80,809 - MIT1002_00075 0.32 +0.1
80,853 + MIT1002_00075 0.36 +0.6
80,976 + MIT1002_00075 0.46 +2.3
80,976 + MIT1002_00075 0.46 -0.6
80,976 + MIT1002_00075 0.46 -0.4
80,984 - MIT1002_00075 0.47 +0.9
80,984 - MIT1002_00075 0.47 -1.1
80,984 - MIT1002_00075 0.47 +1.4
81,002 - MIT1002_00075 0.48 +1.4
81,052 + MIT1002_00075 0.53 -0.5
81,060 + MIT1002_00075 0.53 +1.1
81,078 - MIT1002_00075 0.55 -0.4
81,121 - MIT1002_00075 0.58 +0.0
81,131 + MIT1002_00075 0.59 -2.0
81,181 - MIT1002_00075 0.63 +0.1
81,242 - MIT1002_00075 0.68 +0.7
81,266 + MIT1002_00075 0.70 +1.0
81,291 + MIT1002_00075 0.73 +0.8
81,303 + MIT1002_00075 0.74 -0.8
81,305 - MIT1002_00075 0.74 +1.5
81,311 - MIT1002_00075 0.74 -1.0
81,311 - MIT1002_00075 0.74 -0.7
81,342 + MIT1002_00075 0.77 -0.4
81,350 - MIT1002_00075 0.77 +2.0
81,397 + MIT1002_00075 0.81 +1.3
81,423 + MIT1002_00075 0.84 -1.3
81,470 + MIT1002_00075 0.88 -0.1
81,486 + MIT1002_00075 0.89 -1.0
81,598 + -0.5
81,606 + -0.2
81,606 + -1.7
81,659 + MIT1002_00076 0.18 -1.5
81,769 + MIT1002_00076 0.55 -3.5
81,811 + MIT1002_00076 0.70 -1.9
81,812 + MIT1002_00076 0.70 -2.3
81,820 + MIT1002_00076 0.73 +1.1
81,829 + MIT1002_00076 0.76 -1.4
82,032 + -2.9
82,045 + +1.1
82,045 + +0.1
82,102 + +1.6
82,102 + +1.4
82,102 + +0.1
82,102 + +0.5
82,102 + -3.2
82,102 + -0.3
82,107 + +1.1
82,110 - -0.3
82,110 - -0.1
82,110 - +0.4
82,110 - -1.2
82,110 - +1.5
82,110 - -0.1
82,110 - -0.2
82,110 - +1.9
82,110 - -2.1
82,110 - -0.6
82,110 - -0.6
82,110 - +0.2
82,110 - -2.0
82,110 - +0.1
82,117 + +0.5
82,235 - +0.4
82,296 + +1.5
82,310 - -0.5
82,369 - MIT1002_00077 0.12 -0.7
82,408 - MIT1002_00077 0.15 +0.7
82,413 - MIT1002_00077 0.15 -0.0
82,413 - MIT1002_00077 0.15 -0.1
82,445 + MIT1002_00077 0.17 -1.0
82,512 + MIT1002_00077 0.22 -0.3
82,527 - MIT1002_00077 0.23 +0.1
82,569 - MIT1002_00077 0.26 +0.6
82,572 + MIT1002_00077 0.26 +0.2
82,610 - MIT1002_00077 0.29 +2.0
82,613 + MIT1002_00077 0.29 -0.5
82,616 - MIT1002_00077 0.30 +0.7
82,616 - MIT1002_00077 0.30 +0.3
82,634 + MIT1002_00077 0.31 +0.3
82,634 + MIT1002_00077 0.31 -0.3
82,634 + MIT1002_00077 0.31 -0.1
82,642 - MIT1002_00077 0.31 -0.5
82,642 - MIT1002_00077 0.31 -0.7
82,642 - MIT1002_00077 0.31 -0.1
82,642 - MIT1002_00077 0.31 -0.1
82,647 - MIT1002_00077 0.32 -0.9
82,678 - MIT1002_00077 0.34 -0.5
82,780 + MIT1002_00077 0.41 -0.3
82,792 + MIT1002_00077 0.42 -0.5
82,792 + MIT1002_00077 0.42 -1.4
82,792 + MIT1002_00077 0.42 -0.2
82,792 + MIT1002_00077 0.42 -2.4
82,797 + MIT1002_00077 0.42 +0.9
82,800 - MIT1002_00077 0.43 -0.3
82,800 - MIT1002_00077 0.43 -0.6
82,800 - MIT1002_00077 0.43 -1.2
82,802 + MIT1002_00077 0.43 +0.0
82,802 + MIT1002_00077 0.43 +0.7
82,802 + MIT1002_00077 0.43 -0.5
82,802 + MIT1002_00077 0.43 +2.5
82,802 + MIT1002_00077 0.43 +1.4
82,802 + MIT1002_00077 0.43 +0.1
82,802 + MIT1002_00077 0.43 +0.4
82,805 - MIT1002_00077 0.43 +0.7
82,810 - MIT1002_00077 0.43 -0.6
82,810 - MIT1002_00077 0.43 +0.4
82,810 - MIT1002_00077 0.43 -0.3
82,810 - MIT1002_00077 0.43 +0.3
82,810 - MIT1002_00077 0.43 -0.2
82,810 - MIT1002_00077 0.43 +0.4

Or see this region's nucleotide sequence