Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44660

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS44655 and QEN71_RS44660 are separated by 307 nucleotides QEN71_RS44655: QEN71_RS44655 - transposase, at 396,382 to 397,014 _RS44655 QEN71_RS44660: QEN71_RS44660 - IS110 family transposase, at 397,322 to 398,383 _RS44660 Position (kb) 397 398 399Strain fitness (log2 ratio) -1 0 1at 398.594 kb on + strandat 398.605 kb on + strandat 398.639 kb on + strandat 398.639 kb on + strandat 398.640 kb on - strandat 398.640 kb on - strandat 398.640 kb on - strandat 398.659 kb on - strandat 398.743 kb on + strandat 398.798 kb on + strandat 398.821 kb on + strandat 398.821 kb on + strandat 398.851 kb on + strandat 398.894 kb on + strandat 398.894 kb on + strandat 398.918 kb on - strandat 398.918 kb on - strandat 398.989 kb on - strandat 398.989 kb on - strandat 399.021 kb on + strandat 399.022 kb on - strandat 399.168 kb on - strandat 399.220 kb on + strandat 399.256 kb on - strandat 399.256 kb on - strandat 399.268 kb on + strandat 399.268 kb on + strandat 399.306 kb on + strandat 399.310 kb on + strandat 399.311 kb on - strandat 399.325 kb on + strandat 399.340 kb on + strandat 399.341 kb on - strandat 399.341 kb on - strandat 399.356 kb on + strandat 399.356 kb on + strandat 399.356 kb on + strandat 399.356 kb on + strandat 399.356 kb on + strandat 399.357 kb on - strandat 399.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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398,594 + -1.1
398,605 + -1.0
398,639 + +0.3
398,639 + -0.4
398,640 - +0.2
398,640 - -0.7
398,640 - +0.4
398,659 - -0.7
398,743 + -1.6
398,798 + +0.3
398,821 + +0.0
398,821 + -0.1
398,851 + -0.4
398,894 + -1.3
398,894 + +0.2
398,918 - -0.2
398,918 - -0.3
398,989 - -1.3
398,989 - +0.6
399,021 + -0.6
399,022 - -0.7
399,168 - -1.1
399,220 + -1.0
399,256 - +1.4
399,256 - -0.5
399,268 + -0.6
399,268 + +0.1
399,306 + +0.0
399,310 + +0.2
399,311 - +0.3
399,325 + +0.8
399,340 + -0.3
399,341 - +0.5
399,341 - -0.1
399,356 + -0.1
399,356 + -0.2
399,356 + +0.4
399,356 + -1.3
399,356 + -0.2
399,357 - -1.1
399,360 - +0.3

Or see this region's nucleotide sequence