Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44080

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS44070 and QEN71_RS44075 are separated by 4 nucleotidesQEN71_RS44075 and QEN71_RS44080 overlap by 14 nucleotidesQEN71_RS44080 and QEN71_RS44085 are separated by 8 nucleotides QEN71_RS44070: QEN71_RS44070 - ATPase, T2SS/T4P/T4SS family, at 287,433 to 289,844 _RS44070 QEN71_RS44075: QEN71_RS44075 - hypothetical protein, at 289,849 to 290,433 _RS44075 QEN71_RS44080: QEN71_RS44080 - hypothetical protein, at 290,420 to 291,697 _RS44080 QEN71_RS44085: QEN71_RS44085 - type II secretory pathway protein, at 291,706 to 293,337 _RS44085 Position (kb) 290 291 292Strain fitness (log2 ratio) -2 -1 0 1 2at 289.469 kb on - strand, within QEN71_RS44070at 289.551 kb on + strand, within QEN71_RS44070at 289.600 kb on - strand, within QEN71_RS44070at 289.771 kb on - strandat 289.826 kb on + strandat 289.884 kb on + strandat 289.940 kb on - strand, within QEN71_RS44075at 289.940 kb on - strand, within QEN71_RS44075at 289.970 kb on - strand, within QEN71_RS44075at 290.075 kb on + strand, within QEN71_RS44075at 290.090 kb on + strand, within QEN71_RS44075at 290.118 kb on + strand, within QEN71_RS44075at 290.118 kb on + strand, within QEN71_RS44075at 290.119 kb on - strand, within QEN71_RS44075at 290.119 kb on - strand, within QEN71_RS44075at 290.119 kb on - strand, within QEN71_RS44075at 290.126 kb on + strand, within QEN71_RS44075at 290.126 kb on + strand, within QEN71_RS44075at 290.127 kb on - strand, within QEN71_RS44075at 290.127 kb on - strand, within QEN71_RS44075at 290.127 kb on - strand, within QEN71_RS44075at 290.248 kb on + strand, within QEN71_RS44075at 290.429 kb on + strandat 290.430 kb on - strandat 290.433 kb on + strandat 290.433 kb on + strandat 290.433 kb on + strandat 290.433 kb on + strandat 290.433 kb on + strandat 290.433 kb on + strandat 290.434 kb on - strandat 290.434 kb on - strandat 290.434 kb on - strandat 290.434 kb on - strandat 290.434 kb on - strandat 290.434 kb on - strandat 290.436 kb on + strandat 290.436 kb on + strandat 290.436 kb on + strandat 290.436 kb on + strandat 290.436 kb on + strandat 290.436 kb on + strandat 290.437 kb on - strandat 290.437 kb on - strandat 290.437 kb on - strandat 290.437 kb on - strandat 290.437 kb on - strandat 290.548 kb on + strand, within QEN71_RS44080at 290.548 kb on + strand, within QEN71_RS44080at 290.548 kb on + strand, within QEN71_RS44080at 290.548 kb on + strand, within QEN71_RS44080at 290.548 kb on + strand, within QEN71_RS44080at 290.548 kb on + strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.550 kb on + strand, within QEN71_RS44080at 290.550 kb on + strand, within QEN71_RS44080at 290.550 kb on + strand, within QEN71_RS44080at 290.551 kb on - strand, within QEN71_RS44080at 290.551 kb on - strand, within QEN71_RS44080at 290.573 kb on + strand, within QEN71_RS44080at 290.573 kb on + strand, within QEN71_RS44080at 290.573 kb on + strand, within QEN71_RS44080at 290.574 kb on - strand, within QEN71_RS44080at 290.655 kb on + strand, within QEN71_RS44080at 290.656 kb on - strand, within QEN71_RS44080at 290.828 kb on + strand, within QEN71_RS44080at 290.828 kb on + strand, within QEN71_RS44080at 290.829 kb on - strand, within QEN71_RS44080at 290.829 kb on - strand, within QEN71_RS44080at 290.929 kb on + strand, within QEN71_RS44080at 290.929 kb on + strand, within QEN71_RS44080at 290.929 kb on + strand, within QEN71_RS44080at 290.930 kb on - strand, within QEN71_RS44080at 291.066 kb on + strand, within QEN71_RS44080at 291.067 kb on - strand, within QEN71_RS44080at 291.067 kb on - strand, within QEN71_RS44080at 291.067 kb on - strand, within QEN71_RS44080at 291.103 kb on + strand, within QEN71_RS44080at 291.104 kb on - strand, within QEN71_RS44080at 291.104 kb on - strand, within QEN71_RS44080at 291.104 kb on - strand, within QEN71_RS44080at 291.104 kb on - strand, within QEN71_RS44080at 291.104 kb on - strand, within QEN71_RS44080at 291.105 kb on + strand, within QEN71_RS44080at 291.105 kb on + strand, within QEN71_RS44080at 291.105 kb on + strand, within QEN71_RS44080at 291.105 kb on + strand, within QEN71_RS44080at 291.106 kb on - strand, within QEN71_RS44080at 291.106 kb on - strand, within QEN71_RS44080at 291.106 kb on - strand, within QEN71_RS44080at 291.106 kb on - strand, within QEN71_RS44080at 291.106 kb on - strand, within QEN71_RS44080at 291.148 kb on + strand, within QEN71_RS44080at 291.425 kb on + strand, within QEN71_RS44080at 291.487 kb on - strand, within QEN71_RS44080at 291.536 kb on + strand, within QEN71_RS44080at 291.536 kb on + strand, within QEN71_RS44080at 291.537 kb on - strand, within QEN71_RS44080at 291.595 kb on - strandat 291.630 kb on + strandat 291.631 kb on - strandat 291.631 kb on - strandat 291.812 kb on + strandat 291.812 kb on + strandat 291.812 kb on + strandat 291.812 kb on + strandat 291.812 kb on + strandat 291.813 kb on - strandat 291.813 kb on - strandat 291.813 kb on - strandat 291.813 kb on - strandat 291.813 kb on - strandat 291.813 kb on - strandat 291.833 kb on + strandat 291.833 kb on + strandat 291.833 kb on + strandat 291.833 kb on + strandat 291.834 kb on - strandat 291.834 kb on - strandat 291.834 kb on - strandat 291.834 kb on - strandat 291.834 kb on - strandat 291.949 kb on - strand, within QEN71_RS44085at 291.949 kb on - strand, within QEN71_RS44085at 291.949 kb on - strand, within QEN71_RS44085at 291.984 kb on - strand, within QEN71_RS44085at 292.063 kb on - strand, within QEN71_RS44085at 292.063 kb on - strand, within QEN71_RS44085at 292.063 kb on - strand, within QEN71_RS44085at 292.063 kb on - strand, within QEN71_RS44085at 292.124 kb on + strand, within QEN71_RS44085at 292.124 kb on + strand, within QEN71_RS44085at 292.125 kb on - strand, within QEN71_RS44085at 292.211 kb on + strand, within QEN71_RS44085at 292.211 kb on + strand, within QEN71_RS44085at 292.211 kb on + strand, within QEN71_RS44085at 292.211 kb on + strand, within QEN71_RS44085at 292.211 kb on + strand, within QEN71_RS44085at 292.211 kb on + strand, within QEN71_RS44085at 292.212 kb on - strand, within QEN71_RS44085at 292.351 kb on - strand, within QEN71_RS44085at 292.351 kb on - strand, within QEN71_RS44085at 292.351 kb on - strand, within QEN71_RS44085at 292.405 kb on + strand, within QEN71_RS44085at 292.518 kb on + strand, within QEN71_RS44085at 292.656 kb on + strand, within QEN71_RS44085at 292.662 kb on + strand, within QEN71_RS44085at 292.662 kb on + strand, within QEN71_RS44085at 292.662 kb on + strand, within QEN71_RS44085at 292.662 kb on + strand, within QEN71_RS44085at 292.662 kb on + strand, within QEN71_RS44085at 292.663 kb on - strand, within QEN71_RS44085at 292.669 kb on - strand, within QEN71_RS44085at 292.696 kb on - strand, within QEN71_RS44085

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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289,469 - QEN71_RS44070 0.84 +0.1
289,551 + QEN71_RS44070 0.88 -0.1
289,600 - QEN71_RS44070 0.90 +0.3
289,771 - +0.8
289,826 + +0.0
289,884 + -0.2
289,940 - QEN71_RS44075 0.16 -0.2
289,940 - QEN71_RS44075 0.16 +0.5
289,970 - QEN71_RS44075 0.21 +0.1
290,075 + QEN71_RS44075 0.39 -1.1
290,090 + QEN71_RS44075 0.41 -0.2
290,118 + QEN71_RS44075 0.46 -0.6
290,118 + QEN71_RS44075 0.46 -0.3
290,119 - QEN71_RS44075 0.46 -1.7
290,119 - QEN71_RS44075 0.46 +0.3
290,119 - QEN71_RS44075 0.46 -0.6
290,126 + QEN71_RS44075 0.47 +0.2
290,126 + QEN71_RS44075 0.47 -0.2
290,127 - QEN71_RS44075 0.48 -1.0
290,127 - QEN71_RS44075 0.48 -0.4
290,127 - QEN71_RS44075 0.48 +0.3
290,248 + QEN71_RS44075 0.68 +0.5
290,429 + -1.2
290,430 - -0.6
290,433 + -0.5
290,433 + +1.4
290,433 + +0.5
290,433 + +0.5
290,433 + +1.3
290,433 + -0.1
290,434 - +0.3
290,434 - +0.5
290,434 - -1.0
290,434 - -0.4
290,434 - +0.1
290,434 - -0.3
290,436 + -0.2
290,436 + +0.6
290,436 + -0.3
290,436 + -0.1
290,436 + +0.1
290,436 + -0.5
290,437 - -1.3
290,437 - -0.3
290,437 - -1.0
290,437 - -0.3
290,437 - +0.2
290,548 + QEN71_RS44080 0.10 -0.5
290,548 + QEN71_RS44080 0.10 -1.3
290,548 + QEN71_RS44080 0.10 -0.1
290,548 + QEN71_RS44080 0.10 +2.1
290,548 + QEN71_RS44080 0.10 +0.1
290,548 + QEN71_RS44080 0.10 -0.4
290,549 - QEN71_RS44080 0.10 +1.0
290,549 - QEN71_RS44080 0.10 +0.3
290,549 - QEN71_RS44080 0.10 +0.3
290,549 - QEN71_RS44080 0.10 +1.0
290,549 - QEN71_RS44080 0.10 -1.0
290,549 - QEN71_RS44080 0.10 -0.3
290,549 - QEN71_RS44080 0.10 -0.2
290,549 - QEN71_RS44080 0.10 -1.0
290,549 - QEN71_RS44080 0.10 +0.7
290,549 - QEN71_RS44080 0.10 +0.4
290,550 + QEN71_RS44080 0.10 -0.1
290,550 + QEN71_RS44080 0.10 +1.1
290,550 + QEN71_RS44080 0.10 -0.8
290,551 - QEN71_RS44080 0.10 +0.2
290,551 - QEN71_RS44080 0.10 -0.4
290,573 + QEN71_RS44080 0.12 -0.2
290,573 + QEN71_RS44080 0.12 +0.8
290,573 + QEN71_RS44080 0.12 +0.3
290,574 - QEN71_RS44080 0.12 +0.2
290,655 + QEN71_RS44080 0.18 -0.0
290,656 - QEN71_RS44080 0.18 -0.6
290,828 + QEN71_RS44080 0.32 +0.7
290,828 + QEN71_RS44080 0.32 -0.5
290,829 - QEN71_RS44080 0.32 +1.8
290,829 - QEN71_RS44080 0.32 -0.5
290,929 + QEN71_RS44080 0.40 +1.1
290,929 + QEN71_RS44080 0.40 +0.5
290,929 + QEN71_RS44080 0.40 -0.0
290,930 - QEN71_RS44080 0.40 -0.5
291,066 + QEN71_RS44080 0.51 +0.7
291,067 - QEN71_RS44080 0.51 -0.7
291,067 - QEN71_RS44080 0.51 -0.7
291,067 - QEN71_RS44080 0.51 -1.3
291,103 + QEN71_RS44080 0.53 -0.1
291,104 - QEN71_RS44080 0.54 -0.7
291,104 - QEN71_RS44080 0.54 -0.5
291,104 - QEN71_RS44080 0.54 -1.6
291,104 - QEN71_RS44080 0.54 -0.3
291,104 - QEN71_RS44080 0.54 -1.1
291,105 + QEN71_RS44080 0.54 -0.2
291,105 + QEN71_RS44080 0.54 +0.1
291,105 + QEN71_RS44080 0.54 +1.4
291,105 + QEN71_RS44080 0.54 -0.4
291,106 - QEN71_RS44080 0.54 +0.3
291,106 - QEN71_RS44080 0.54 +0.1
291,106 - QEN71_RS44080 0.54 +0.8
291,106 - QEN71_RS44080 0.54 -0.4
291,106 - QEN71_RS44080 0.54 -2.6
291,148 + QEN71_RS44080 0.57 -1.7
291,425 + QEN71_RS44080 0.79 -0.5
291,487 - QEN71_RS44080 0.83 -1.5
291,536 + QEN71_RS44080 0.87 -1.2
291,536 + QEN71_RS44080 0.87 -1.3
291,537 - QEN71_RS44080 0.87 +0.1
291,595 - +0.4
291,630 + -0.2
291,631 - -1.5
291,631 - -0.3
291,812 + +0.5
291,812 + -0.6
291,812 + -0.5
291,812 + -1.5
291,812 + +0.0
291,813 - +0.0
291,813 - -1.6
291,813 - -0.4
291,813 - -1.1
291,813 - +0.3
291,813 - -1.0
291,833 + -0.8
291,833 + -0.4
291,833 + +0.7
291,833 + -0.4
291,834 - +0.6
291,834 - -1.5
291,834 - -0.9
291,834 - -1.0
291,834 - -0.2
291,949 - QEN71_RS44085 0.15 -1.1
291,949 - QEN71_RS44085 0.15 -0.5
291,949 - QEN71_RS44085 0.15 -1.2
291,984 - QEN71_RS44085 0.17 +0.5
292,063 - QEN71_RS44085 0.22 -1.7
292,063 - QEN71_RS44085 0.22 +1.1
292,063 - QEN71_RS44085 0.22 -0.4
292,063 - QEN71_RS44085 0.22 -0.2
292,124 + QEN71_RS44085 0.26 -0.2
292,124 + QEN71_RS44085 0.26 -2.1
292,125 - QEN71_RS44085 0.26 -0.2
292,211 + QEN71_RS44085 0.31 -1.1
292,211 + QEN71_RS44085 0.31 +2.7
292,211 + QEN71_RS44085 0.31 -0.9
292,211 + QEN71_RS44085 0.31 -0.2
292,211 + QEN71_RS44085 0.31 -1.5
292,211 + QEN71_RS44085 0.31 -0.6
292,212 - QEN71_RS44085 0.31 +0.7
292,351 - QEN71_RS44085 0.40 +0.7
292,351 - QEN71_RS44085 0.40 -0.2
292,351 - QEN71_RS44085 0.40 -0.5
292,405 + QEN71_RS44085 0.43 +0.4
292,518 + QEN71_RS44085 0.50 -0.7
292,656 + QEN71_RS44085 0.58 +0.2
292,662 + QEN71_RS44085 0.59 +1.0
292,662 + QEN71_RS44085 0.59 -0.9
292,662 + QEN71_RS44085 0.59 +0.4
292,662 + QEN71_RS44085 0.59 -1.1
292,662 + QEN71_RS44085 0.59 -1.3
292,663 - QEN71_RS44085 0.59 +0.5
292,669 - QEN71_RS44085 0.59 +2.4
292,696 - QEN71_RS44085 0.61 -0.5

Or see this region's nucleotide sequence