Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41775 and QEN71_RS41780 are separated by 135 nucleotides QEN71_RS41780 and QEN71_RS41785 are separated by 622 nucleotides QEN71_RS41785 and QEN71_RS41790 overlap by 4 nucleotides
QEN71_RS41775: QEN71_RS41775 - DUF4435 domain-containing protein, at 433,981 to 434,955
_RS41775
QEN71_RS41780: QEN71_RS41780 - AAA family ATPase, at 435,091 to 436,812
_RS41780
QEN71_RS41785: QEN71_RS41785 - HU family DNA-binding protein, at 437,435 to 437,713
_RS41785
QEN71_RS41790: QEN71_RS41790 - PDDEXK nuclease domain-containing protein, at 437,710 to 438,894
_RS41790
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1 at 434.117 kb on - strand, within QEN71_RS41775 at 434.132 kb on + strand, within QEN71_RS41775 at 434.132 kb on + strand, within QEN71_RS41775 at 434.133 kb on - strand, within QEN71_RS41775 at 434.208 kb on + strand, within QEN71_RS41775 at 434.209 kb on - strand, within QEN71_RS41775 at 434.209 kb on - strand, within QEN71_RS41775 at 434.209 kb on - strand, within QEN71_RS41775 at 434.236 kb on - strand, within QEN71_RS41775 at 434.329 kb on + strand, within QEN71_RS41775 at 434.330 kb on - strand, within QEN71_RS41775 at 434.466 kb on + strand, within QEN71_RS41775 at 434.466 kb on + strand, within QEN71_RS41775 at 434.510 kb on + strand, within QEN71_RS41775 at 434.510 kb on + strand, within QEN71_RS41775 at 434.510 kb on + strand, within QEN71_RS41775 at 434.511 kb on - strand, within QEN71_RS41775 at 434.535 kb on - strand, within QEN71_RS41775 at 434.541 kb on + strand, within QEN71_RS41775 at 434.637 kb on + strand, within QEN71_RS41775 at 434.637 kb on + strand, within QEN71_RS41775 at 434.690 kb on - strand, within QEN71_RS41775 at 434.726 kb on - strand, within QEN71_RS41775 at 434.807 kb on + strand, within QEN71_RS41775 at 434.808 kb on - strand, within QEN71_RS41775 at 434.962 kb on + strand at 434.962 kb on + strand at 434.963 kb on - strand at 435.024 kb on + strand at 435.162 kb on + strand at 435.182 kb on + strand at 435.182 kb on + strand at 435.182 kb on + strand at 435.200 kb on + strand at 435.200 kb on + strand at 435.200 kb on + strand at 435.200 kb on + strand at 435.200 kb on + strand at 435.200 kb on + strand at 435.200 kb on + strand at 435.201 kb on - strand at 435.201 kb on - strand at 435.251 kb on + strand at 435.251 kb on + strand at 435.251 kb on + strand at 435.251 kb on + strand at 435.252 kb on - strand at 435.252 kb on - strand at 435.252 kb on - strand at 435.252 kb on - strand at 435.254 kb on - strand at 435.254 kb on - strand at 435.306 kb on + strand, within QEN71_RS41780 at 435.327 kb on + strand, within QEN71_RS41780 at 435.327 kb on + strand, within QEN71_RS41780 at 435.361 kb on + strand, within QEN71_RS41780 at 435.361 kb on + strand, within QEN71_RS41780 at 435.362 kb on - strand, within QEN71_RS41780 at 435.362 kb on - strand, within QEN71_RS41780 at 435.403 kb on + strand, within QEN71_RS41780 at 435.441 kb on - strand, within QEN71_RS41780 at 435.463 kb on - strand, within QEN71_RS41780 at 435.475 kb on + strand, within QEN71_RS41780 at 435.476 kb on - strand, within QEN71_RS41780 at 435.511 kb on + strand, within QEN71_RS41780 at 435.511 kb on + strand, within QEN71_RS41780 at 435.515 kb on + strand, within QEN71_RS41780 at 435.516 kb on - strand, within QEN71_RS41780 at 435.600 kb on - strand, within QEN71_RS41780 at 435.635 kb on + strand, within QEN71_RS41780 at 435.636 kb on - strand, within QEN71_RS41780 at 435.636 kb on - strand, within QEN71_RS41780 at 435.639 kb on + strand, within QEN71_RS41780 at 435.639 kb on + strand, within QEN71_RS41780 at 435.639 kb on + strand, within QEN71_RS41780 at 435.639 kb on + strand, within QEN71_RS41780 at 435.640 kb on - strand, within QEN71_RS41780 at 435.640 kb on - strand, within QEN71_RS41780 at 435.640 kb on - strand, within QEN71_RS41780 at 435.640 kb on - strand, within QEN71_RS41780 at 435.762 kb on - strand, within QEN71_RS41780 at 435.852 kb on + strand, within QEN71_RS41780 at 435.852 kb on + strand, within QEN71_RS41780 at 435.852 kb on + strand, within QEN71_RS41780 at 435.853 kb on - strand, within QEN71_RS41780 at 435.853 kb on - strand, within QEN71_RS41780 at 435.853 kb on - strand, within QEN71_RS41780 at 435.853 kb on - strand, within QEN71_RS41780 at 435.853 kb on - strand, within QEN71_RS41780 at 435.854 kb on + strand, within QEN71_RS41780 at 435.981 kb on - strand, within QEN71_RS41780 at 435.981 kb on - strand, within QEN71_RS41780 at 435.981 kb on - strand, within QEN71_RS41780 at 436.054 kb on + strand, within QEN71_RS41780 at 436.163 kb on + strand, within QEN71_RS41780 at 436.163 kb on + strand, within QEN71_RS41780 at 436.164 kb on - strand, within QEN71_RS41780 at 436.164 kb on - strand, within QEN71_RS41780 at 436.173 kb on + strand, within QEN71_RS41780 at 436.173 kb on + strand, within QEN71_RS41780 at 436.173 kb on + strand, within QEN71_RS41780 at 436.175 kb on + strand, within QEN71_RS41780 at 436.206 kb on - strand, within QEN71_RS41780 at 436.283 kb on + strand, within QEN71_RS41780 at 436.284 kb on - strand, within QEN71_RS41780 at 436.414 kb on + strand, within QEN71_RS41780 at 436.508 kb on + strand, within QEN71_RS41780 at 436.508 kb on + strand, within QEN71_RS41780 at 436.509 kb on - strand, within QEN71_RS41780 at 436.509 kb on - strand, within QEN71_RS41780 at 436.510 kb on + strand, within QEN71_RS41780 at 436.541 kb on + strand, within QEN71_RS41780 at 436.541 kb on + strand, within QEN71_RS41780 at 436.576 kb on + strand, within QEN71_RS41780 at 436.674 kb on + strand at 436.674 kb on + strand at 436.674 kb on + strand at 436.680 kb on - strand at 436.680 kb on - strand at 436.680 kb on - strand at 436.708 kb on + strand at 436.708 kb on + strand at 436.734 kb on - strand at 436.734 kb on - strand at 436.753 kb on + strand at 436.753 kb on + strand at 436.753 kb on + strand at 436.754 kb on - strand at 436.759 kb on - strand at 436.816 kb on + strand at 436.816 kb on + strand at 436.817 kb on - strand at 436.817 kb on - strand at 436.819 kb on + strand at 436.819 kb on + strand at 436.819 kb on + strand at 436.819 kb on + strand at 436.819 kb on + strand at 436.820 kb on - strand at 436.820 kb on - strand at 436.820 kb on - strand at 436.971 kb on - strand at 436.975 kb on + strand at 437.026 kb on + strand at 437.079 kb on - strand at 437.121 kb on + strand at 437.122 kb on - strand at 437.141 kb on - strand at 437.141 kb on - strand at 437.168 kb on + strand at 437.168 kb on + strand at 437.168 kb on + strand at 437.168 kb on + strand at 437.168 kb on + strand at 437.168 kb on + strand at 437.168 kb on + strand at 437.169 kb on - strand at 437.169 kb on - strand at 437.169 kb on - strand at 437.169 kb on - strand at 437.169 kb on - strand at 437.169 kb on - strand at 437.261 kb on - strand at 437.261 kb on - strand at 437.261 kb on - strand at 437.285 kb on + strand at 437.290 kb on - strand at 437.290 kb on - strand at 437.298 kb on - strand at 437.305 kb on + strand at 437.306 kb on - strand at 437.306 kb on - strand at 437.398 kb on - strand at 437.754 kb on + strand at 437.754 kb on + strand at 437.754 kb on + strand at 437.754 kb on + strand at 437.762 kb on + strand at 437.762 kb on + strand at 437.762 kb on + strand at 437.762 kb on + strand at 437.762 kb on + strand at 437.762 kb on + strand at 437.763 kb on - strand at 437.763 kb on - strand at 437.763 kb on - strand at 437.763 kb on - strand at 437.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 434,117 - QEN71_RS41775 0.14 -0.9 434,132 + QEN71_RS41775 0.15 -0.6 434,132 + QEN71_RS41775 0.15 +0.8 434,133 - QEN71_RS41775 0.16 +0.2 434,208 + QEN71_RS41775 0.23 +0.1 434,209 - QEN71_RS41775 0.23 +0.5 434,209 - QEN71_RS41775 0.23 -0.6 434,209 - QEN71_RS41775 0.23 -0.8 434,236 - QEN71_RS41775 0.26 +0.0 434,329 + QEN71_RS41775 0.36 -0.1 434,330 - QEN71_RS41775 0.36 +0.0 434,466 + QEN71_RS41775 0.50 +1.2 434,466 + QEN71_RS41775 0.50 +0.8 434,510 + QEN71_RS41775 0.54 -1.7 434,510 + QEN71_RS41775 0.54 -0.2 434,510 + QEN71_RS41775 0.54 -0.8 434,511 - QEN71_RS41775 0.54 -0.8 434,535 - QEN71_RS41775 0.57 +0.6 434,541 + QEN71_RS41775 0.57 +0.4 434,637 + QEN71_RS41775 0.67 -1.0 434,637 + QEN71_RS41775 0.67 +0.2 434,690 - QEN71_RS41775 0.73 -0.8 434,726 - QEN71_RS41775 0.76 +0.1 434,807 + QEN71_RS41775 0.85 -1.6 434,808 - QEN71_RS41775 0.85 -0.9 434,962 + -0.3 434,962 + -0.3 434,963 - -1.0 435,024 + -0.5 435,162 + +0.2 435,182 + -0.6 435,182 + +0.8 435,182 + -0.5 435,200 + +0.6 435,200 + +0.1 435,200 + +1.3 435,200 + -0.2 435,200 + -1.1 435,200 + -0.9 435,200 + -0.6 435,201 - -0.2 435,201 - +0.8 435,251 + -0.3 435,251 + +1.4 435,251 + -0.3 435,251 + -0.6 435,252 - +0.1 435,252 - +0.7 435,252 - +0.5 435,252 - +0.4 435,254 - -0.8 435,254 - -2.0 435,306 + QEN71_RS41780 0.12 +0.6 435,327 + QEN71_RS41780 0.14 -1.6 435,327 + QEN71_RS41780 0.14 -1.5 435,361 + QEN71_RS41780 0.16 +0.1 435,361 + QEN71_RS41780 0.16 +1.0 435,362 - QEN71_RS41780 0.16 +0.5 435,362 - QEN71_RS41780 0.16 -0.1 435,403 + QEN71_RS41780 0.18 +0.0 435,441 - QEN71_RS41780 0.20 -0.9 435,463 - QEN71_RS41780 0.22 -0.6 435,475 + QEN71_RS41780 0.22 +0.2 435,476 - QEN71_RS41780 0.22 -0.5 435,511 + QEN71_RS41780 0.24 -0.2 435,511 + QEN71_RS41780 0.24 -0.3 435,515 + QEN71_RS41780 0.25 -1.6 435,516 - QEN71_RS41780 0.25 +0.0 435,600 - QEN71_RS41780 0.30 -1.3 435,635 + QEN71_RS41780 0.32 +0.3 435,636 - QEN71_RS41780 0.32 -2.2 435,636 - QEN71_RS41780 0.32 -0.2 435,639 + QEN71_RS41780 0.32 -0.0 435,639 + QEN71_RS41780 0.32 +0.7 435,639 + QEN71_RS41780 0.32 +0.5 435,639 + QEN71_RS41780 0.32 -0.1 435,640 - QEN71_RS41780 0.32 -0.2 435,640 - QEN71_RS41780 0.32 +0.7 435,640 - QEN71_RS41780 0.32 -0.3 435,640 - QEN71_RS41780 0.32 +0.9 435,762 - QEN71_RS41780 0.39 -0.3 435,852 + QEN71_RS41780 0.44 -0.6 435,852 + QEN71_RS41780 0.44 -0.6 435,852 + QEN71_RS41780 0.44 -0.0 435,853 - QEN71_RS41780 0.44 -0.6 435,853 - QEN71_RS41780 0.44 -0.0 435,853 - QEN71_RS41780 0.44 +1.0 435,853 - QEN71_RS41780 0.44 +0.3 435,853 - QEN71_RS41780 0.44 -0.4 435,854 + QEN71_RS41780 0.44 -0.3 435,981 - QEN71_RS41780 0.52 +0.1 435,981 - QEN71_RS41780 0.52 -0.4 435,981 - QEN71_RS41780 0.52 -1.4 436,054 + QEN71_RS41780 0.56 -0.2 436,163 + QEN71_RS41780 0.62 -0.1 436,163 + QEN71_RS41780 0.62 -1.2 436,164 - QEN71_RS41780 0.62 -0.4 436,164 - QEN71_RS41780 0.62 -2.1 436,173 + QEN71_RS41780 0.63 +0.7 436,173 + QEN71_RS41780 0.63 -1.3 436,173 + QEN71_RS41780 0.63 -0.6 436,175 + QEN71_RS41780 0.63 -1.0 436,206 - QEN71_RS41780 0.65 -1.3 436,283 + QEN71_RS41780 0.69 -1.7 436,284 - QEN71_RS41780 0.69 -1.2 436,414 + QEN71_RS41780 0.77 -0.3 436,508 + QEN71_RS41780 0.82 -0.4 436,508 + QEN71_RS41780 0.82 -0.0 436,509 - QEN71_RS41780 0.82 -1.0 436,509 - QEN71_RS41780 0.82 +0.2 436,510 + QEN71_RS41780 0.82 -0.3 436,541 + QEN71_RS41780 0.84 +1.1 436,541 + QEN71_RS41780 0.84 +0.8 436,576 + QEN71_RS41780 0.86 +1.0 436,674 + -1.8 436,674 + -1.8 436,674 + -0.1 436,680 - -1.1 436,680 - +0.0 436,680 - +0.7 436,708 + -0.4 436,708 + +0.0 436,734 - +0.7 436,734 - -0.3 436,753 + +0.5 436,753 + +0.1 436,753 + -0.8 436,754 - -0.8 436,759 - -0.1 436,816 + +0.6 436,816 + -1.2 436,817 - +0.1 436,817 - -0.2 436,819 + -1.3 436,819 + +0.5 436,819 + -0.1 436,819 + +0.3 436,819 + -0.7 436,820 - -0.8 436,820 - +1.1 436,820 - +0.4 436,971 - +0.1 436,975 + -0.1 437,026 + +0.4 437,079 - +0.1 437,121 + -0.8 437,122 - -1.3 437,141 - +1.5 437,141 - +0.1 437,168 + +0.8 437,168 + -0.8 437,168 + +0.5 437,168 + -1.2 437,168 + +0.3 437,168 + -0.3 437,168 + +0.3 437,169 - +0.6 437,169 - +0.9 437,169 - +0.1 437,169 - -0.1 437,169 - +0.0 437,169 - -0.0 437,261 - +0.2 437,261 - +0.6 437,261 - -1.5 437,285 + -0.2 437,290 - +0.9 437,290 - -2.0 437,298 - -0.0 437,305 + -0.2 437,306 - +0.7 437,306 - -0.1 437,398 - +0.8 437,754 + -0.3 437,754 + -1.5 437,754 + +0.7 437,754 + +1.1 437,762 + -1.0 437,762 + +0.5 437,762 + -0.2 437,762 + +0.4 437,762 + -0.3 437,762 + +1.2 437,763 - +0.5 437,763 - +0.9 437,763 - -0.6 437,763 - +1.1 437,763 - -0.3
Or see this region's nucleotide sequence