Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39990 and QEN71_RS39995 overlap by 4 nucleotides QEN71_RS39995 and QEN71_RS40000 are separated by 718 nucleotides QEN71_RS40000 and QEN71_RS40005 are separated by 294 nucleotides QEN71_RS40005 and QEN71_RS40010 overlap by 20 nucleotides QEN71_RS40010 and QEN71_RS40015 are separated by 41 nucleotides
QEN71_RS39990: QEN71_RS39990 - hypothetical protein, at 52,873 to 53,430
_RS39990
QEN71_RS39995: QEN71_RS39995 - hypothetical protein, at 53,427 to 53,702
_RS39995
QEN71_RS40000: QEN71_RS40000 - ATP-binding protein, at 54,421 to 54,894
_RS40000
QEN71_RS40005: QEN71_RS40005 - hypothetical protein, at 55,189 to 55,356
_RS40005
QEN71_RS40010: QEN71_RS40010 - recombinase family protein, at 55,337 to 55,510
_RS40010
QEN71_RS40015: QEN71_RS40015 - IS66 family transposase, at 55,552 to 57,117
_RS40015
Position (kb) 54
55 Strain fitness (log2 ratio) -1
0
1
2 at 53.441 kb on + strand at 53.441 kb on + strand at 53.441 kb on + strand at 53.441 kb on + strand at 53.442 kb on - strand at 53.442 kb on - strand at 53.442 kb on - strand at 53.442 kb on - strand at 53.716 kb on + strand at 53.852 kb on + strand at 53.852 kb on + strand at 53.913 kb on + strand at 53.940 kb on - strand at 53.940 kb on - strand at 53.975 kb on + strand at 53.976 kb on - strand at 54.108 kb on + strand at 54.109 kb on - strand at 54.114 kb on + strand at 54.114 kb on + strand at 54.115 kb on - strand at 54.395 kb on + strand at 54.395 kb on + strand at 55.377 kb on - strand, within QEN71_RS40010 at 55.377 kb on - strand, within QEN71_RS40010 at 55.377 kb on - strand, within QEN71_RS40010 at 55.377 kb on - strand, within QEN71_RS40010 at 55.377 kb on - strand, within QEN71_RS40010
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 53,441 + -1.2 53,441 + +0.1 53,441 + +2.0 53,441 + -0.6 53,442 - +0.6 53,442 - -0.2 53,442 - -0.9 53,442 - -0.1 53,716 + -0.9 53,852 + +1.2 53,852 + -0.0 53,913 + +0.2 53,940 - -0.6 53,940 - -0.3 53,975 + +1.0 53,976 - +1.3 54,108 + +0.9 54,109 - -0.6 54,114 + -0.5 54,114 + -1.1 54,115 - +0.1 54,395 + -0.1 54,395 + +1.6 55,377 - QEN71_RS40010 0.23 +0.3 55,377 - QEN71_RS40010 0.23 -0.0 55,377 - QEN71_RS40010 0.23 -0.1 55,377 - QEN71_RS40010 0.23 +0.6 55,377 - QEN71_RS40010 0.23 +1.7
Or see this region's nucleotide sequence