Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39610

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39605 and QEN71_RS39610 are separated by 108 nucleotidesQEN71_RS39610 and QEN71_RS39615 are separated by 206 nucleotides QEN71_RS39605: QEN71_RS39605 - LysR substrate-binding domain-containing protein, at 2,274,206 to 2,275,123 _RS39605 QEN71_RS39610: QEN71_RS39610 - glycine betaine ABC transporter substrate-binding protein, at 2,275,232 to 2,276,236 _RS39610 QEN71_RS39615: QEN71_RS39615 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 2,276,443 to 2,277,570 _RS39615 Position (kb) 2275 2276 2277Strain fitness (log2 ratio) -2 -1 0 1 2at 2274.294 kb on + strandat 2274.295 kb on - strandat 2274.295 kb on - strandat 2274.333 kb on - strand, within QEN71_RS39605at 2274.436 kb on + strand, within QEN71_RS39605at 2274.436 kb on + strand, within QEN71_RS39605at 2274.436 kb on + strand, within QEN71_RS39605at 2274.447 kb on + strand, within QEN71_RS39605at 2274.576 kb on + strand, within QEN71_RS39605at 2275.153 kb on - strandat 2275.153 kb on - strandat 2275.153 kb on - strandat 2275.233 kb on + strandat 2275.233 kb on + strandat 2275.234 kb on - strandat 2275.234 kb on - strandat 2275.404 kb on + strand, within QEN71_RS39610at 2275.635 kb on + strand, within QEN71_RS39610at 2275.636 kb on - strand, within QEN71_RS39610at 2275.636 kb on - strand, within QEN71_RS39610at 2275.723 kb on - strand, within QEN71_RS39610at 2275.723 kb on - strand, within QEN71_RS39610at 2275.770 kb on + strand, within QEN71_RS39610at 2276.444 kb on + strandat 2276.566 kb on + strand, within QEN71_RS39615at 2276.781 kb on - strand, within QEN71_RS39615at 2276.985 kb on - strand, within QEN71_RS39615at 2277.172 kb on + strand, within QEN71_RS39615at 2277.226 kb on + strand, within QEN71_RS39615

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,274,294 + +1.3
2,274,295 - -2.6
2,274,295 - -0.0
2,274,333 - QEN71_RS39605 0.14 -0.2
2,274,436 + QEN71_RS39605 0.25 -1.8
2,274,436 + QEN71_RS39605 0.25 -0.3
2,274,436 + QEN71_RS39605 0.25 +0.4
2,274,447 + QEN71_RS39605 0.26 -0.8
2,274,576 + QEN71_RS39605 0.40 -1.0
2,275,153 - +0.4
2,275,153 - -0.0
2,275,153 - -0.0
2,275,233 + +0.7
2,275,233 + -0.0
2,275,234 - -2.1
2,275,234 - -0.2
2,275,404 + QEN71_RS39610 0.17 +1.6
2,275,635 + QEN71_RS39610 0.40 -0.4
2,275,636 - QEN71_RS39610 0.40 -0.0
2,275,636 - QEN71_RS39610 0.40 -0.4
2,275,723 - QEN71_RS39610 0.49 +0.2
2,275,723 - QEN71_RS39610 0.49 -0.7
2,275,770 + QEN71_RS39610 0.54 -1.5
2,276,444 + -0.0
2,276,566 + QEN71_RS39615 0.11 -0.4
2,276,781 - QEN71_RS39615 0.30 +0.3
2,276,985 - QEN71_RS39615 0.48 +0.0
2,277,172 + QEN71_RS39615 0.65 +2.7
2,277,226 + QEN71_RS39615 0.69 -1.4

Or see this region's nucleotide sequence