Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36575

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36565 and QEN71_RS36570 overlap by 32 nucleotidesQEN71_RS36570 and QEN71_RS36575 are separated by 535 nucleotidesQEN71_RS36575 and QEN71_RS36580 are separated by 67 nucleotides QEN71_RS36565: QEN71_RS36565 - hypothetical protein, at 1,587,246 to 1,587,827 _RS36565 QEN71_RS36570: QEN71_RS36570 - hypothetical protein, at 1,587,796 to 1,587,975 _RS36570 QEN71_RS36575: QEN71_RS36575 - hypothetical protein, at 1,588,511 to 1,588,900 _RS36575 QEN71_RS36580: QEN71_RS36580 - LacI family DNA-binding transcriptional regulator, at 1,588,968 to 1,589,972 _RS36580 Position (kb) 1588 1589Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1587.519 kb on + strand, within QEN71_RS36565at 1587.554 kb on + strand, within QEN71_RS36565at 1587.555 kb on - strand, within QEN71_RS36565at 1587.686 kb on + strand, within QEN71_RS36565at 1587.797 kb on + strandat 1587.798 kb on - strandat 1587.825 kb on + strandat 1587.825 kb on + strandat 1587.826 kb on - strandat 1588.183 kb on - strandat 1588.250 kb on - strandat 1588.250 kb on - strandat 1588.250 kb on - strandat 1588.250 kb on - strandat 1588.287 kb on + strandat 1588.288 kb on - strandat 1588.585 kb on + strand, within QEN71_RS36575at 1588.683 kb on + strand, within QEN71_RS36575at 1588.717 kb on + strand, within QEN71_RS36575at 1588.747 kb on + strand, within QEN71_RS36575at 1588.747 kb on + strand, within QEN71_RS36575at 1588.748 kb on - strand, within QEN71_RS36575at 1588.890 kb on + strandat 1588.891 kb on - strandat 1588.891 kb on - strandat 1588.921 kb on - strandat 1588.921 kb on - strandat 1588.921 kb on - strandat 1588.955 kb on + strandat 1588.955 kb on + strandat 1588.955 kb on + strandat 1588.956 kb on - strandat 1588.956 kb on - strandat 1588.956 kb on - strandat 1588.956 kb on - strandat 1589.055 kb on + strandat 1589.055 kb on + strandat 1589.056 kb on - strandat 1589.056 kb on - strandat 1589.056 kb on - strandat 1589.167 kb on - strand, within QEN71_RS36580at 1589.167 kb on - strand, within QEN71_RS36580at 1589.167 kb on - strand, within QEN71_RS36580at 1589.705 kb on - strand, within QEN71_RS36580at 1589.752 kb on + strand, within QEN71_RS36580

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,587,519 + QEN71_RS36565 0.47 -0.3
1,587,554 + QEN71_RS36565 0.53 -0.9
1,587,555 - QEN71_RS36565 0.53 +1.0
1,587,686 + QEN71_RS36565 0.76 +0.3
1,587,797 + +2.0
1,587,798 - -0.0
1,587,825 + +0.5
1,587,825 + -0.3
1,587,826 - +0.8
1,588,183 - -0.1
1,588,250 - +0.1
1,588,250 - -0.2
1,588,250 - -0.0
1,588,250 - -0.6
1,588,287 + -0.0
1,588,288 - -0.0
1,588,585 + QEN71_RS36575 0.19 -3.2
1,588,683 + QEN71_RS36575 0.44 -0.3
1,588,717 + QEN71_RS36575 0.53 -0.0
1,588,747 + QEN71_RS36575 0.61 +1.1
1,588,747 + QEN71_RS36575 0.61 -0.1
1,588,748 - QEN71_RS36575 0.61 -0.2
1,588,890 + -1.5
1,588,891 - +0.6
1,588,891 - +1.1
1,588,921 - +0.8
1,588,921 - -0.7
1,588,921 - -0.8
1,588,955 + -0.8
1,588,955 + +0.0
1,588,955 + +0.7
1,588,956 - +0.7
1,588,956 - -0.7
1,588,956 - +1.0
1,588,956 - -0.1
1,589,055 + -0.9
1,589,055 + +0.2
1,589,056 - +0.2
1,589,056 - +1.0
1,589,056 - +1.0
1,589,167 - QEN71_RS36580 0.20 +0.0
1,589,167 - QEN71_RS36580 0.20 +0.4
1,589,167 - QEN71_RS36580 0.20 -0.0
1,589,705 - QEN71_RS36580 0.73 +0.7
1,589,752 + QEN71_RS36580 0.78 +0.2

Or see this region's nucleotide sequence