Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS30790

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS30780 and QEN71_RS30785 are separated by 423 nucleotidesQEN71_RS30785 and QEN71_RS30790 are separated by 306 nucleotidesQEN71_RS30790 and QEN71_RS30795 are separated by 31 nucleotides QEN71_RS30780: QEN71_RS30780 - porin, at 247,069 to 248,262 _RS30780 QEN71_RS30785: QEN71_RS30785 - DUF4148 domain-containing protein, at 248,686 to 248,949 _RS30785 QEN71_RS30790: QEN71_RS30790 - potassium channel family protein, at 249,256 to 249,945 _RS30790 QEN71_RS30795: QEN71_RS30795 - porin, at 249,977 to 251,155 _RS30795 Position (kb) 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 248.296 kb on + strandat 248.296 kb on + strandat 248.344 kb on + strandat 248.345 kb on - strandat 248.768 kb on + strand, within QEN71_RS30785at 248.917 kb on + strand, within QEN71_RS30785at 248.917 kb on + strand, within QEN71_RS30785at 248.982 kb on - strandat 248.982 kb on - strandat 248.987 kb on - strandat 249.013 kb on + strandat 249.013 kb on + strandat 249.046 kb on + strandat 249.141 kb on + strandat 249.141 kb on + strandat 249.142 kb on - strandat 249.142 kb on - strandat 249.142 kb on - strandat 249.230 kb on + strandat 249.231 kb on - strandat 249.231 kb on - strandat 249.231 kb on - strandat 249.233 kb on - strandat 249.233 kb on - strandat 249.233 kb on - strandat 249.238 kb on + strandat 249.327 kb on - strand, within QEN71_RS30790at 249.402 kb on + strand, within QEN71_RS30790at 249.403 kb on - strand, within QEN71_RS30790at 249.403 kb on - strand, within QEN71_RS30790at 249.403 kb on - strand, within QEN71_RS30790at 249.565 kb on + strand, within QEN71_RS30790at 249.566 kb on - strand, within QEN71_RS30790at 249.584 kb on - strand, within QEN71_RS30790at 249.614 kb on + strand, within QEN71_RS30790at 249.615 kb on - strand, within QEN71_RS30790at 249.615 kb on - strand, within QEN71_RS30790at 249.652 kb on + strand, within QEN71_RS30790at 249.652 kb on + strand, within QEN71_RS30790at 249.679 kb on + strand, within QEN71_RS30790at 249.679 kb on + strand, within QEN71_RS30790at 249.679 kb on + strand, within QEN71_RS30790at 249.686 kb on - strand, within QEN71_RS30790at 249.686 kb on - strand, within QEN71_RS30790at 249.718 kb on + strand, within QEN71_RS30790at 249.718 kb on + strand, within QEN71_RS30790at 249.718 kb on + strand, within QEN71_RS30790at 249.718 kb on + strand, within QEN71_RS30790at 249.719 kb on - strand, within QEN71_RS30790at 249.719 kb on - strand, within QEN71_RS30790at 249.720 kb on + strand, within QEN71_RS30790at 249.720 kb on + strand, within QEN71_RS30790at 249.925 kb on + strandat 249.925 kb on + strandat 249.926 kb on - strandat 250.113 kb on + strand, within QEN71_RS30795at 250.114 kb on - strand, within QEN71_RS30795at 250.141 kb on - strand, within QEN71_RS30795at 250.153 kb on + strand, within QEN71_RS30795at 250.154 kb on - strand, within QEN71_RS30795at 250.209 kb on + strand, within QEN71_RS30795at 250.209 kb on + strand, within QEN71_RS30795at 250.209 kb on + strand, within QEN71_RS30795at 250.216 kb on - strand, within QEN71_RS30795at 250.362 kb on + strand, within QEN71_RS30795at 250.363 kb on - strand, within QEN71_RS30795at 250.663 kb on - strand, within QEN71_RS30795at 250.663 kb on - strand, within QEN71_RS30795at 250.663 kb on - strand, within QEN71_RS30795at 250.842 kb on + strand, within QEN71_RS30795at 250.842 kb on + strand, within QEN71_RS30795at 250.843 kb on - strand, within QEN71_RS30795at 250.843 kb on - strand, within QEN71_RS30795at 250.878 kb on + strand, within QEN71_RS30795

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
248,296 + +1.8
248,296 + +0.3
248,344 + -1.3
248,345 - -0.1
248,768 + QEN71_RS30785 0.31 -0.6
248,917 + QEN71_RS30785 0.88 -0.8
248,917 + QEN71_RS30785 0.88 +0.5
248,982 - -0.3
248,982 - -0.3
248,987 - +0.0
249,013 + +1.0
249,013 + +1.1
249,046 + -0.1
249,141 + -0.3
249,141 + +0.2
249,142 - +1.6
249,142 - -0.4
249,142 - -1.2
249,230 + +0.2
249,231 - +0.1
249,231 - +0.1
249,231 - -0.3
249,233 - -2.5
249,233 - -0.4
249,233 - -0.5
249,238 + +0.1
249,327 - QEN71_RS30790 0.10 -0.6
249,402 + QEN71_RS30790 0.21 -0.7
249,403 - QEN71_RS30790 0.21 -1.5
249,403 - QEN71_RS30790 0.21 -0.6
249,403 - QEN71_RS30790 0.21 -0.8
249,565 + QEN71_RS30790 0.45 +0.4
249,566 - QEN71_RS30790 0.45 +0.1
249,584 - QEN71_RS30790 0.48 -0.8
249,614 + QEN71_RS30790 0.52 -0.6
249,615 - QEN71_RS30790 0.52 -0.3
249,615 - QEN71_RS30790 0.52 -0.2
249,652 + QEN71_RS30790 0.57 -0.1
249,652 + QEN71_RS30790 0.57 +0.7
249,679 + QEN71_RS30790 0.61 +1.2
249,679 + QEN71_RS30790 0.61 -0.0
249,679 + QEN71_RS30790 0.61 -0.8
249,686 - QEN71_RS30790 0.62 -1.9
249,686 - QEN71_RS30790 0.62 +0.7
249,718 + QEN71_RS30790 0.67 -1.7
249,718 + QEN71_RS30790 0.67 +0.2
249,718 + QEN71_RS30790 0.67 -0.7
249,718 + QEN71_RS30790 0.67 -0.2
249,719 - QEN71_RS30790 0.67 -0.9
249,719 - QEN71_RS30790 0.67 +0.1
249,720 + QEN71_RS30790 0.67 -2.3
249,720 + QEN71_RS30790 0.67 -0.3
249,925 + -0.4
249,925 + +0.7
249,926 - -0.6
250,113 + QEN71_RS30795 0.12 -0.2
250,114 - QEN71_RS30795 0.12 +0.6
250,141 - QEN71_RS30795 0.14 +0.1
250,153 + QEN71_RS30795 0.15 +0.1
250,154 - QEN71_RS30795 0.15 +1.0
250,209 + QEN71_RS30795 0.20 -1.9
250,209 + QEN71_RS30795 0.20 -1.5
250,209 + QEN71_RS30795 0.20 -1.2
250,216 - QEN71_RS30795 0.20 -0.1
250,362 + QEN71_RS30795 0.33 +0.4
250,363 - QEN71_RS30795 0.33 -0.4
250,663 - QEN71_RS30795 0.58 -0.6
250,663 - QEN71_RS30795 0.58 -2.0
250,663 - QEN71_RS30795 0.58 -1.7
250,842 + QEN71_RS30795 0.73 -0.2
250,842 + QEN71_RS30795 0.73 -0.2
250,843 - QEN71_RS30795 0.73 -1.8
250,843 - QEN71_RS30795 0.73 +0.6
250,878 + QEN71_RS30795 0.76 +0.2

Or see this region's nucleotide sequence