Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42345 and QEN71_RS42350 are separated by 715 nucleotides QEN71_RS42350 and QEN71_RS42355 overlap by 4 nucleotides QEN71_RS42355 and QEN71_RS42360 overlap by 4 nucleotides
QEN71_RS42345: QEN71_RS42345 - hypothetical protein, at 549,418 to 549,617
_RS42345
QEN71_RS42350: QEN71_RS42350 - site-specific integrase, at 550,333 to 551,199
_RS42350
QEN71_RS42355: QEN71_RS42355 - tyrosine-type recombinase/integrase, at 551,196 to 552,188
_RS42355
QEN71_RS42360: QEN71_RS42360 - tyrosine-type recombinase/integrase, at 552,185 to 553,189
_RS42360
Position (kb) 550
551
552 Strain fitness (log2 ratio) -1
0
1 at 549.493 kb on - strand, within QEN71_RS42345 at 549.828 kb on - strand at 549.889 kb on - strand at 549.951 kb on + strand at 549.955 kb on - strand at 550.045 kb on - strand at 550.372 kb on - strand at 550.372 kb on - strand at 550.385 kb on - strand at 550.415 kb on - strand at 550.460 kb on + strand, within QEN71_RS42350 at 550.483 kb on + strand, within QEN71_RS42350 at 550.638 kb on + strand, within QEN71_RS42350 at 550.638 kb on + strand, within QEN71_RS42350 at 550.639 kb on - strand, within QEN71_RS42350 at 550.735 kb on + strand, within QEN71_RS42350 at 551.207 kb on + strand at 551.238 kb on - strand at 551.319 kb on + strand, within QEN71_RS42355 at 551.320 kb on - strand, within QEN71_RS42355 at 551.326 kb on + strand, within QEN71_RS42355 at 551.494 kb on + strand, within QEN71_RS42355 at 551.827 kb on - strand, within QEN71_RS42355 at 551.860 kb on + strand, within QEN71_RS42355 at 551.861 kb on - strand, within QEN71_RS42355 at 552.013 kb on - strand, within QEN71_RS42355 at 552.013 kb on - strand, within QEN71_RS42355 at 552.096 kb on + strand at 552.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 549,493 - QEN71_RS42345 0.38 -0.5 549,828 - -0.4 549,889 - +0.2 549,951 + -1.2 549,955 - +1.0 550,045 - +1.0 550,372 - +0.1 550,372 - +1.3 550,385 - -0.6 550,415 - +0.6 550,460 + QEN71_RS42350 0.15 +1.0 550,483 + QEN71_RS42350 0.17 +0.1 550,638 + QEN71_RS42350 0.35 +0.1 550,638 + QEN71_RS42350 0.35 +0.5 550,639 - QEN71_RS42350 0.35 +0.1 550,735 + QEN71_RS42350 0.46 +1.2 551,207 + -0.5 551,238 - -0.0 551,319 + QEN71_RS42355 0.12 +1.7 551,320 - QEN71_RS42355 0.12 +0.4 551,326 + QEN71_RS42355 0.13 -0.4 551,494 + QEN71_RS42355 0.30 -0.0 551,827 - QEN71_RS42355 0.64 -0.3 551,860 + QEN71_RS42355 0.67 -0.3 551,861 - QEN71_RS42355 0.67 +0.1 552,013 - QEN71_RS42355 0.82 -0.1 552,013 - QEN71_RS42355 0.82 -0.7 552,096 + +1.1 552,097 - -0.2
Or see this region's nucleotide sequence