Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37730

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37725 and QEN71_RS37730 are separated by 117 nucleotidesQEN71_RS37730 and QEN71_RS37735 are separated by 78 nucleotides QEN71_RS37725: QEN71_RS37725 - oxidoreductase, at 1,830,431 to 1,831,288 _RS37725 QEN71_RS37730: QEN71_RS37730 - LysR family transcriptional regulator, at 1,831,406 to 1,832,335 _RS37730 QEN71_RS37735: QEN71_RS37735 - M1 family metallopeptidase, at 1,832,414 to 1,834,585 _RS37735 Position (kb) 1831 1832 1833Strain fitness (log2 ratio) -2 -1 0 1at 1830.667 kb on - strand, within QEN71_RS37725at 1830.667 kb on - strand, within QEN71_RS37725at 1830.729 kb on + strand, within QEN71_RS37725at 1830.729 kb on + strand, within QEN71_RS37725at 1830.825 kb on + strand, within QEN71_RS37725at 1830.825 kb on + strand, within QEN71_RS37725at 1830.826 kb on - strand, within QEN71_RS37725at 1830.826 kb on - strand, within QEN71_RS37725at 1830.826 kb on - strand, within QEN71_RS37725at 1830.826 kb on - strand, within QEN71_RS37725at 1830.826 kb on - strand, within QEN71_RS37725at 1830.826 kb on - strand, within QEN71_RS37725at 1830.957 kb on + strand, within QEN71_RS37725at 1830.957 kb on + strand, within QEN71_RS37725at 1830.958 kb on - strand, within QEN71_RS37725at 1830.958 kb on - strand, within QEN71_RS37725at 1831.328 kb on + strandat 1831.328 kb on + strandat 1831.328 kb on + strandat 1831.329 kb on - strandat 1831.329 kb on - strandat 1831.352 kb on - strandat 1831.352 kb on - strandat 1831.384 kb on + strandat 1831.384 kb on + strandat 1831.384 kb on + strandat 1831.384 kb on + strandat 1831.385 kb on - strandat 1831.385 kb on - strandat 1831.447 kb on + strandat 1831.447 kb on + strandat 1831.448 kb on - strandat 1831.758 kb on - strand, within QEN71_RS37730at 1831.917 kb on - strand, within QEN71_RS37730at 1831.917 kb on - strand, within QEN71_RS37730at 1831.918 kb on + strand, within QEN71_RS37730at 1832.043 kb on - strand, within QEN71_RS37730at 1832.213 kb on + strand, within QEN71_RS37730at 1832.213 kb on + strand, within QEN71_RS37730at 1832.213 kb on + strand, within QEN71_RS37730at 1832.214 kb on - strand, within QEN71_RS37730at 1832.214 kb on - strand, within QEN71_RS37730at 1832.219 kb on + strand, within QEN71_RS37730at 1832.219 kb on + strand, within QEN71_RS37730at 1832.219 kb on + strand, within QEN71_RS37730at 1832.220 kb on - strand, within QEN71_RS37730at 1832.220 kb on - strand, within QEN71_RS37730at 1832.222 kb on + strand, within QEN71_RS37730at 1832.303 kb on + strandat 1832.334 kb on - strandat 1832.370 kb on + strandat 1832.370 kb on + strandat 1832.394 kb on + strandat 1832.394 kb on + strandat 1832.688 kb on + strand, within QEN71_RS37735at 1832.688 kb on + strand, within QEN71_RS37735at 1832.689 kb on - strand, within QEN71_RS37735at 1832.689 kb on - strand, within QEN71_RS37735at 1832.689 kb on - strand, within QEN71_RS37735at 1832.689 kb on - strand, within QEN71_RS37735at 1832.691 kb on + strand, within QEN71_RS37735at 1832.691 kb on + strand, within QEN71_RS37735at 1832.692 kb on - strand, within QEN71_RS37735at 1832.726 kb on - strand, within QEN71_RS37735at 1832.756 kb on - strand, within QEN71_RS37735at 1833.048 kb on + strand, within QEN71_RS37735at 1833.048 kb on + strand, within QEN71_RS37735at 1833.049 kb on - strand, within QEN71_RS37735at 1833.087 kb on + strand, within QEN71_RS37735at 1833.087 kb on + strand, within QEN71_RS37735at 1833.087 kb on + strand, within QEN71_RS37735at 1833.126 kb on + strand, within QEN71_RS37735at 1833.126 kb on + strand, within QEN71_RS37735at 1833.127 kb on - strand, within QEN71_RS37735at 1833.231 kb on + strand, within QEN71_RS37735at 1833.231 kb on + strand, within QEN71_RS37735at 1833.232 kb on - strand, within QEN71_RS37735at 1833.303 kb on + strand, within QEN71_RS37735at 1833.304 kb on - strand, within QEN71_RS37735at 1833.304 kb on - strand, within QEN71_RS37735at 1833.304 kb on - strand, within QEN71_RS37735

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,830,667 - QEN71_RS37725 0.28 -1.1
1,830,667 - QEN71_RS37725 0.28 -0.1
1,830,729 + QEN71_RS37725 0.35 +0.5
1,830,729 + QEN71_RS37725 0.35 -0.8
1,830,825 + QEN71_RS37725 0.46 -0.1
1,830,825 + QEN71_RS37725 0.46 +0.1
1,830,826 - QEN71_RS37725 0.46 +0.4
1,830,826 - QEN71_RS37725 0.46 -0.1
1,830,826 - QEN71_RS37725 0.46 -0.4
1,830,826 - QEN71_RS37725 0.46 +0.1
1,830,826 - QEN71_RS37725 0.46 -0.6
1,830,826 - QEN71_RS37725 0.46 +0.0
1,830,957 + QEN71_RS37725 0.61 -0.5
1,830,957 + QEN71_RS37725 0.61 -0.1
1,830,958 - QEN71_RS37725 0.61 -0.6
1,830,958 - QEN71_RS37725 0.61 -0.5
1,831,328 + -0.8
1,831,328 + -0.4
1,831,328 + -0.1
1,831,329 - -0.5
1,831,329 - -0.5
1,831,352 - -1.2
1,831,352 - -0.7
1,831,384 + -0.6
1,831,384 + -0.2
1,831,384 + +0.2
1,831,384 + -1.6
1,831,385 - -0.9
1,831,385 - -1.1
1,831,447 + +0.5
1,831,447 + +0.9
1,831,448 - -0.6
1,831,758 - QEN71_RS37730 0.38 +0.5
1,831,917 - QEN71_RS37730 0.55 +0.7
1,831,917 - QEN71_RS37730 0.55 -1.8
1,831,918 + QEN71_RS37730 0.55 -0.1
1,832,043 - QEN71_RS37730 0.68 -0.8
1,832,213 + QEN71_RS37730 0.87 +0.1
1,832,213 + QEN71_RS37730 0.87 +1.6
1,832,213 + QEN71_RS37730 0.87 -0.2
1,832,214 - QEN71_RS37730 0.87 -0.5
1,832,214 - QEN71_RS37730 0.87 -0.9
1,832,219 + QEN71_RS37730 0.87 -1.5
1,832,219 + QEN71_RS37730 0.87 +0.3
1,832,219 + QEN71_RS37730 0.87 +0.2
1,832,220 - QEN71_RS37730 0.88 +0.1
1,832,220 - QEN71_RS37730 0.88 -0.4
1,832,222 + QEN71_RS37730 0.88 +0.3
1,832,303 + +0.3
1,832,334 - +0.3
1,832,370 + -0.7
1,832,370 + -0.6
1,832,394 + -0.7
1,832,394 + -1.2
1,832,688 + QEN71_RS37735 0.13 -0.2
1,832,688 + QEN71_RS37735 0.13 -2.2
1,832,689 - QEN71_RS37735 0.13 +0.1
1,832,689 - QEN71_RS37735 0.13 -1.4
1,832,689 - QEN71_RS37735 0.13 -0.0
1,832,689 - QEN71_RS37735 0.13 -0.0
1,832,691 + QEN71_RS37735 0.13 +0.2
1,832,691 + QEN71_RS37735 0.13 -0.9
1,832,692 - QEN71_RS37735 0.13 -0.5
1,832,726 - QEN71_RS37735 0.14 -2.0
1,832,756 - QEN71_RS37735 0.16 -1.1
1,833,048 + QEN71_RS37735 0.29 -1.2
1,833,048 + QEN71_RS37735 0.29 -0.1
1,833,049 - QEN71_RS37735 0.29 -0.9
1,833,087 + QEN71_RS37735 0.31 +0.1
1,833,087 + QEN71_RS37735 0.31 -1.0
1,833,087 + QEN71_RS37735 0.31 +0.8
1,833,126 + QEN71_RS37735 0.33 +0.1
1,833,126 + QEN71_RS37735 0.33 -0.9
1,833,127 - QEN71_RS37735 0.33 -0.1
1,833,231 + QEN71_RS37735 0.38 +0.7
1,833,231 + QEN71_RS37735 0.38 -0.1
1,833,232 - QEN71_RS37735 0.38 +0.1
1,833,303 + QEN71_RS37735 0.41 +1.1
1,833,304 - QEN71_RS37735 0.41 -0.5
1,833,304 - QEN71_RS37735 0.41 +0.4
1,833,304 - QEN71_RS37735 0.41 -1.7

Or see this region's nucleotide sequence