Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35260

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35260 and QEN71_RS35265 are separated by 254 nucleotides QEN71_RS35260: QEN71_RS35260 - M15 family metallopeptidase, at 1,260,817 to 1,261,320 _RS35260 QEN71_RS35265: QEN71_RS35265 - hypothetical protein, at 1,261,575 to 1,262,330 _RS35265 Position (kb) 1260 1261 1262Strain fitness (log2 ratio) -1 0 1 2at 1260.348 kb on - strandat 1260.448 kb on - strandat 1260.498 kb on + strandat 1260.499 kb on - strandat 1260.699 kb on + strandat 1260.845 kb on + strandat 1260.857 kb on + strandat 1260.858 kb on - strandat 1261.234 kb on + strand, within QEN71_RS35260at 1261.355 kb on - strandat 1261.355 kb on - strandat 1261.378 kb on + strandat 1261.413 kb on - strandat 1261.429 kb on + strandat 1261.429 kb on + strandat 1261.709 kb on + strand, within QEN71_RS35265at 1261.709 kb on + strand, within QEN71_RS35265at 1262.001 kb on - strand, within QEN71_RS35265at 1262.238 kb on + strand, within QEN71_RS35265at 1262.239 kb on - strand, within QEN71_RS35265

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,260,348 - -1.2
1,260,448 - -0.5
1,260,498 + -0.1
1,260,499 - +0.1
1,260,699 + -0.8
1,260,845 + -1.2
1,260,857 + -0.8
1,260,858 - +0.9
1,261,234 + QEN71_RS35260 0.83 -0.1
1,261,355 - -1.3
1,261,355 - +0.0
1,261,378 + -1.6
1,261,413 - +0.1
1,261,429 + -0.4
1,261,429 + +2.4
1,261,709 + QEN71_RS35265 0.18 +0.1
1,261,709 + QEN71_RS35265 0.18 +0.6
1,262,001 - QEN71_RS35265 0.56 +0.0
1,262,238 + QEN71_RS35265 0.88 +1.1
1,262,239 - QEN71_RS35265 0.88 -0.3

Or see this region's nucleotide sequence