Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS26465

Experiment: D-Sorbitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS26455 and QEN71_RS26460 overlap by 8 nucleotidesQEN71_RS26460 and QEN71_RS26465 overlap by 4 nucleotidesQEN71_RS26465 and QEN71_RS26470 are separated by 48 nucleotidesQEN71_RS26470 and QEN71_RS26475 are separated by 11 nucleotides QEN71_RS26455: QEN71_RS26455 - DnaA regulatory inactivator Hda, at 5,899,847 to 5,900,620 _RS26455 QEN71_RS26460: QEN71_RS26460 - HAD family hydrolase, at 5,900,613 to 5,901,299 _RS26460 QEN71_RS26465: QEN71_RS26465 - polynucleotide adenylyltransferase PcnB, at 5,901,296 to 5,902,891 _RS26465 QEN71_RS26470: QEN71_RS26470 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 5,902,940 to 5,903,494 _RS26470 QEN71_RS26475: QEN71_RS26475 - deoxynucleoside kinase, at 5,903,506 to 5,904,186 _RS26475 Position (kb) 5901 5902 5903Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5900.599 kb on + strandat 5900.599 kb on + strandat 5900.599 kb on + strandat 5900.600 kb on - strandat 5900.604 kb on + strandat 5900.604 kb on + strandat 5900.604 kb on + strandat 5900.618 kb on + strandat 5900.754 kb on + strand, within QEN71_RS26460at 5900.754 kb on + strand, within QEN71_RS26460at 5900.754 kb on + strand, within QEN71_RS26460at 5900.754 kb on + strand, within QEN71_RS26460at 5900.754 kb on + strand, within QEN71_RS26460at 5900.755 kb on - strand, within QEN71_RS26460at 5900.784 kb on + strand, within QEN71_RS26460at 5900.784 kb on + strand, within QEN71_RS26460at 5900.784 kb on + strand, within QEN71_RS26460at 5900.784 kb on + strand, within QEN71_RS26460at 5900.784 kb on + strand, within QEN71_RS26460at 5900.784 kb on + strand, within QEN71_RS26460at 5900.785 kb on - strand, within QEN71_RS26460at 5900.785 kb on - strand, within QEN71_RS26460at 5900.785 kb on - strand, within QEN71_RS26460at 5900.853 kb on + strand, within QEN71_RS26460at 5900.853 kb on + strand, within QEN71_RS26460at 5900.853 kb on + strand, within QEN71_RS26460at 5900.853 kb on + strand, within QEN71_RS26460at 5900.853 kb on + strand, within QEN71_RS26460at 5900.853 kb on + strand, within QEN71_RS26460at 5900.853 kb on + strand, within QEN71_RS26460at 5900.853 kb on + strand, within QEN71_RS26460at 5900.853 kb on + strand, within QEN71_RS26460at 5900.853 kb on + strand, within QEN71_RS26460at 5900.854 kb on - strand, within QEN71_RS26460at 5900.854 kb on - strand, within QEN71_RS26460at 5900.854 kb on - strand, within QEN71_RS26460at 5901.051 kb on + strand, within QEN71_RS26460at 5901.051 kb on + strand, within QEN71_RS26460at 5901.051 kb on + strand, within QEN71_RS26460at 5901.052 kb on - strand, within QEN71_RS26460at 5901.082 kb on - strand, within QEN71_RS26460at 5901.159 kb on + strand, within QEN71_RS26460at 5901.159 kb on + strand, within QEN71_RS26460at 5901.165 kb on + strand, within QEN71_RS26460at 5901.165 kb on + strand, within QEN71_RS26460at 5901.166 kb on - strand, within QEN71_RS26460at 5901.166 kb on - strand, within QEN71_RS26460at 5901.166 kb on - strand, within QEN71_RS26460at 5901.180 kb on - strand, within QEN71_RS26460at 5901.947 kb on + strand, within QEN71_RS26465at 5901.947 kb on + strand, within QEN71_RS26465at 5901.947 kb on + strand, within QEN71_RS26465at 5901.948 kb on - strand, within QEN71_RS26465at 5901.950 kb on + strand, within QEN71_RS26465at 5901.950 kb on + strand, within QEN71_RS26465at 5901.950 kb on + strand, within QEN71_RS26465at 5901.951 kb on - strand, within QEN71_RS26465at 5901.951 kb on - strand, within QEN71_RS26465at 5901.981 kb on - strand, within QEN71_RS26465at 5901.981 kb on - strand, within QEN71_RS26465at 5902.046 kb on + strand, within QEN71_RS26465at 5902.448 kb on + strand, within QEN71_RS26465at 5902.621 kb on + strand, within QEN71_RS26465at 5902.622 kb on - strand, within QEN71_RS26465at 5902.632 kb on - strand, within QEN71_RS26465at 5902.934 kb on + strandat 5902.934 kb on + strandat 5902.934 kb on + strandat 5902.934 kb on + strandat 5903.560 kb on + strandat 5903.560 kb on + strandat 5903.683 kb on + strand, within QEN71_RS26475at 5903.683 kb on + strand, within QEN71_RS26475at 5903.683 kb on + strand, within QEN71_RS26475at 5903.684 kb on - strand, within QEN71_RS26475at 5903.684 kb on - strand, within QEN71_RS26475at 5903.855 kb on - strand, within QEN71_RS26475at 5903.855 kb on - strand, within QEN71_RS26475at 5903.855 kb on - strand, within QEN71_RS26475at 5903.863 kb on + strand, within QEN71_RS26475at 5903.863 kb on + strand, within QEN71_RS26475at 5903.863 kb on + strand, within QEN71_RS26475at 5903.863 kb on + strand, within QEN71_RS26475at 5903.864 kb on - strand, within QEN71_RS26475at 5903.890 kb on - strand, within QEN71_RS26475

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
remove
5,900,599 + -0.1
5,900,599 + -1.0
5,900,599 + -0.8
5,900,600 - +1.0
5,900,604 + -0.8
5,900,604 + -1.8
5,900,604 + -0.9
5,900,618 + -0.6
5,900,754 + QEN71_RS26460 0.21 -4.4
5,900,754 + QEN71_RS26460 0.21 -1.7
5,900,754 + QEN71_RS26460 0.21 -0.6
5,900,754 + QEN71_RS26460 0.21 -0.8
5,900,754 + QEN71_RS26460 0.21 +0.2
5,900,755 - QEN71_RS26460 0.21 +0.2
5,900,784 + QEN71_RS26460 0.25 -2.6
5,900,784 + QEN71_RS26460 0.25 -0.6
5,900,784 + QEN71_RS26460 0.25 -5.0
5,900,784 + QEN71_RS26460 0.25 -2.6
5,900,784 + QEN71_RS26460 0.25 -2.9
5,900,784 + QEN71_RS26460 0.25 -3.2
5,900,785 - QEN71_RS26460 0.25 -2.3
5,900,785 - QEN71_RS26460 0.25 -0.4
5,900,785 - QEN71_RS26460 0.25 -0.6
5,900,853 + QEN71_RS26460 0.35 -1.6
5,900,853 + QEN71_RS26460 0.35 -2.4
5,900,853 + QEN71_RS26460 0.35 -3.6
5,900,853 + QEN71_RS26460 0.35 -1.0
5,900,853 + QEN71_RS26460 0.35 -3.9
5,900,853 + QEN71_RS26460 0.35 -1.4
5,900,853 + QEN71_RS26460 0.35 -2.4
5,900,853 + QEN71_RS26460 0.35 -1.7
5,900,853 + QEN71_RS26460 0.35 -1.7
5,900,853 + QEN71_RS26460 0.35 -2.2
5,900,854 - QEN71_RS26460 0.35 -0.4
5,900,854 - QEN71_RS26460 0.35 -0.0
5,900,854 - QEN71_RS26460 0.35 -1.7
5,901,051 + QEN71_RS26460 0.64 -2.7
5,901,051 + QEN71_RS26460 0.64 -2.4
5,901,051 + QEN71_RS26460 0.64 -1.2
5,901,052 - QEN71_RS26460 0.64 +0.2
5,901,082 - QEN71_RS26460 0.68 -2.3
5,901,159 + QEN71_RS26460 0.79 -0.8
5,901,159 + QEN71_RS26460 0.79 +0.2
5,901,165 + QEN71_RS26460 0.80 -3.2
5,901,165 + QEN71_RS26460 0.80 -1.0
5,901,166 - QEN71_RS26460 0.80 +0.2
5,901,166 - QEN71_RS26460 0.80 -0.8
5,901,166 - QEN71_RS26460 0.80 -2.1
5,901,180 - QEN71_RS26460 0.83 -0.8
5,901,947 + QEN71_RS26465 0.41 -0.6
5,901,947 + QEN71_RS26465 0.41 +1.2
5,901,947 + QEN71_RS26465 0.41 -0.3
5,901,948 - QEN71_RS26465 0.41 -0.8
5,901,950 + QEN71_RS26465 0.41 +1.7
5,901,950 + QEN71_RS26465 0.41 +2.2
5,901,950 + QEN71_RS26465 0.41 -0.2
5,901,951 - QEN71_RS26465 0.41 +0.2
5,901,951 - QEN71_RS26465 0.41 +0.2
5,901,981 - QEN71_RS26465 0.43 +0.8
5,901,981 - QEN71_RS26465 0.43 -0.6
5,902,046 + QEN71_RS26465 0.47 -0.8
5,902,448 + QEN71_RS26465 0.72 +1.2
5,902,621 + QEN71_RS26465 0.83 -0.8
5,902,622 - QEN71_RS26465 0.83 -1.6
5,902,632 - QEN71_RS26465 0.84 -0.2
5,902,934 + -0.1
5,902,934 + -0.2
5,902,934 + -0.6
5,902,934 + +0.2
5,903,560 + -1.0
5,903,560 + +0.1
5,903,683 + QEN71_RS26475 0.26 -0.2
5,903,683 + QEN71_RS26475 0.26 +1.7
5,903,683 + QEN71_RS26475 0.26 -0.9
5,903,684 - QEN71_RS26475 0.26 +0.3
5,903,684 - QEN71_RS26475 0.26 -1.2
5,903,855 - QEN71_RS26475 0.51 -0.0
5,903,855 - QEN71_RS26475 0.51 +0.2
5,903,855 - QEN71_RS26475 0.51 +0.7
5,903,863 + QEN71_RS26475 0.52 -1.2
5,903,863 + QEN71_RS26475 0.52 -0.1
5,903,863 + QEN71_RS26475 0.52 -1.2
5,903,863 + QEN71_RS26475 0.52 +0.2
5,903,864 - QEN71_RS26475 0.53 -1.2
5,903,890 - QEN71_RS26475 0.56 +0.6

Or see this region's nucleotide sequence