Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07740

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS07730 and QEN71_RS07735 are separated by 15 nucleotidesQEN71_RS07735 and QEN71_RS07740 are separated by 21 nucleotidesQEN71_RS07740 and QEN71_RS07745 are separated by 61 nucleotides QEN71_RS07730: QEN71_RS07730 - ABC transporter permease subunit, at 1,714,298 to 1,715,020 _RS07730 QEN71_RS07735: QEN71_RS07735 - ABC transporter permease subunit, at 1,715,036 to 1,715,788 _RS07735 QEN71_RS07740: QEN71_RS07740 - ATP-binding cassette domain-containing protein, at 1,715,810 to 1,716,601 _RS07740 QEN71_RS07745: QEN71_RS07745 - histidine ammonia-lyase, at 1,716,663 to 1,718,270 _RS07745 Position (kb) 1715 1716 1717Strain fitness (log2 ratio) -2 -1 0 1 2at 1714.895 kb on + strand, within QEN71_RS07730at 1714.929 kb on - strand, within QEN71_RS07730at 1714.929 kb on - strand, within QEN71_RS07730at 1715.207 kb on + strand, within QEN71_RS07735at 1715.208 kb on - strand, within QEN71_RS07735at 1715.324 kb on + strand, within QEN71_RS07735at 1715.324 kb on + strand, within QEN71_RS07735at 1715.325 kb on - strand, within QEN71_RS07735at 1715.325 kb on - strand, within QEN71_RS07735at 1715.325 kb on - strand, within QEN71_RS07735at 1715.325 kb on - strand, within QEN71_RS07735at 1715.356 kb on + strand, within QEN71_RS07735at 1715.356 kb on + strand, within QEN71_RS07735at 1715.367 kb on - strand, within QEN71_RS07735at 1715.609 kb on + strand, within QEN71_RS07735at 1715.610 kb on - strand, within QEN71_RS07735at 1715.610 kb on - strand, within QEN71_RS07735at 1715.649 kb on - strand, within QEN71_RS07735at 1715.649 kb on - strand, within QEN71_RS07735at 1716.828 kb on - strand, within QEN71_RS07745at 1717.015 kb on + strand, within QEN71_RS07745at 1717.015 kb on + strand, within QEN71_RS07745at 1717.016 kb on - strand, within QEN71_RS07745at 1717.016 kb on - strand, within QEN71_RS07745at 1717.047 kb on + strand, within QEN71_RS07745at 1717.047 kb on + strand, within QEN71_RS07745at 1717.047 kb on + strand, within QEN71_RS07745at 1717.047 kb on + strand, within QEN71_RS07745at 1717.047 kb on + strand, within QEN71_RS07745at 1717.049 kb on + strand, within QEN71_RS07745at 1717.050 kb on - strand, within QEN71_RS07745at 1717.050 kb on - strand, within QEN71_RS07745at 1717.083 kb on + strand, within QEN71_RS07745at 1717.094 kb on + strand, within QEN71_RS07745at 1717.094 kb on + strand, within QEN71_RS07745

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,714,895 + QEN71_RS07730 0.83 +1.4
1,714,929 - QEN71_RS07730 0.87 +0.3
1,714,929 - QEN71_RS07730 0.87 -0.2
1,715,207 + QEN71_RS07735 0.23 -2.1
1,715,208 - QEN71_RS07735 0.23 +0.2
1,715,324 + QEN71_RS07735 0.38 +1.8
1,715,324 + QEN71_RS07735 0.38 -0.4
1,715,325 - QEN71_RS07735 0.38 -0.0
1,715,325 - QEN71_RS07735 0.38 +0.1
1,715,325 - QEN71_RS07735 0.38 +0.2
1,715,325 - QEN71_RS07735 0.38 -0.7
1,715,356 + QEN71_RS07735 0.42 -0.0
1,715,356 + QEN71_RS07735 0.42 -0.7
1,715,367 - QEN71_RS07735 0.44 -0.1
1,715,609 + QEN71_RS07735 0.76 +0.6
1,715,610 - QEN71_RS07735 0.76 -1.0
1,715,610 - QEN71_RS07735 0.76 +2.1
1,715,649 - QEN71_RS07735 0.81 -0.1
1,715,649 - QEN71_RS07735 0.81 +0.2
1,716,828 - QEN71_RS07745 0.10 -0.5
1,717,015 + QEN71_RS07745 0.22 +0.8
1,717,015 + QEN71_RS07745 0.22 -0.6
1,717,016 - QEN71_RS07745 0.22 -1.3
1,717,016 - QEN71_RS07745 0.22 +0.1
1,717,047 + QEN71_RS07745 0.24 -0.5
1,717,047 + QEN71_RS07745 0.24 +0.8
1,717,047 + QEN71_RS07745 0.24 +0.7
1,717,047 + QEN71_RS07745 0.24 -0.5
1,717,047 + QEN71_RS07745 0.24 -0.9
1,717,049 + QEN71_RS07745 0.24 +0.2
1,717,050 - QEN71_RS07745 0.24 +1.8
1,717,050 - QEN71_RS07745 0.24 -1.0
1,717,083 + QEN71_RS07745 0.26 -0.2
1,717,094 + QEN71_RS07745 0.27 +0.7
1,717,094 + QEN71_RS07745 0.27 -0.3

Or see this region's nucleotide sequence