Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06140

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06135 and QEN71_RS06140 are separated by 170 nucleotidesQEN71_RS06140 and QEN71_RS06145 are separated by 46 nucleotides QEN71_RS06135: QEN71_RS06135 - DNA-3-methyladenine glycosylase, at 1,363,131 to 1,364,192 _RS06135 QEN71_RS06140: QEN71_RS06140 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 1,364,363 to 1,365,334 _RS06140 QEN71_RS06145: QEN71_RS06145 - tRNA lysidine(34) synthetase TilS, at 1,365,381 to 1,366,799 _RS06145 Position (kb) 1364 1365 1366Strain fitness (log2 ratio) -2 -1 0 1at 1364.207 kb on + strandat 1364.207 kb on + strandat 1364.207 kb on + strandat 1364.207 kb on + strandat 1364.231 kb on + strandat 1364.231 kb on + strandat 1364.231 kb on + strandat 1364.231 kb on + strandat 1364.232 kb on - strandat 1364.267 kb on + strandat 1364.267 kb on + strandat 1364.267 kb on + strandat 1364.267 kb on + strandat 1364.278 kb on + strandat 1364.278 kb on + strandat 1364.323 kb on + strandat 1364.323 kb on + strandat 1364.323 kb on + strandat 1365.332 kb on + strandat 1365.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,364,207 + +0.0
1,364,207 + -0.1
1,364,207 + +0.1
1,364,207 + -2.0
1,364,231 + +1.2
1,364,231 + -0.1
1,364,231 + -0.7
1,364,231 + -0.4
1,364,232 - +0.4
1,364,267 + -0.1
1,364,267 + -0.1
1,364,267 + -0.3
1,364,267 + -0.8
1,364,278 + -0.4
1,364,278 + +1.4
1,364,323 + +0.6
1,364,323 + -0.2
1,364,323 + +0.4
1,365,332 + -1.4
1,365,333 - -0.2

Or see this region's nucleotide sequence