Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05170

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05160 and QEN71_RS05165 are separated by 17 nucleotidesQEN71_RS05165 and QEN71_RS05170 are separated by 38 nucleotidesQEN71_RS05170 and QEN71_RS05175 are separated by 111 nucleotidesQEN71_RS05175 and QEN71_RS05180 are separated by 2 nucleotides QEN71_RS05160: QEN71_RS05160 - hypothetical protein, at 1,135,836 to 1,135,997 _RS05160 QEN71_RS05165: QEN71_RS05165 - metallophosphoesterase, at 1,136,015 to 1,136,845 _RS05165 QEN71_RS05170: QEN71_RS05170 - FAD-binding oxidoreductase, at 1,136,884 to 1,138,311 _RS05170 QEN71_RS05175: QEN71_RS05175 - DUF2069 domain-containing protein, at 1,138,423 to 1,138,854 _RS05175 QEN71_RS05180: QEN71_RS05180 - NAD(P)H:quinone oxidoreductase, at 1,138,857 to 1,139,459 _RS05180 Position (kb) 1136 1137 1138 1139Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1136.083 kb on - strandat 1136.083 kb on - strandat 1136.083 kb on - strandat 1136.083 kb on - strandat 1136.083 kb on - strandat 1136.124 kb on + strand, within QEN71_RS05165at 1136.125 kb on - strand, within QEN71_RS05165at 1136.125 kb on - strand, within QEN71_RS05165at 1136.137 kb on + strand, within QEN71_RS05165at 1136.138 kb on - strand, within QEN71_RS05165at 1136.138 kb on - strand, within QEN71_RS05165at 1136.143 kb on + strand, within QEN71_RS05165at 1136.143 kb on + strand, within QEN71_RS05165at 1136.143 kb on + strand, within QEN71_RS05165at 1136.446 kb on - strand, within QEN71_RS05165at 1136.508 kb on + strand, within QEN71_RS05165at 1136.508 kb on + strand, within QEN71_RS05165at 1136.509 kb on - strand, within QEN71_RS05165at 1136.509 kb on - strand, within QEN71_RS05165at 1136.589 kb on + strand, within QEN71_RS05165at 1136.589 kb on + strand, within QEN71_RS05165at 1136.589 kb on + strand, within QEN71_RS05165at 1136.590 kb on - strand, within QEN71_RS05165at 1136.590 kb on - strand, within QEN71_RS05165at 1136.590 kb on - strand, within QEN71_RS05165at 1136.590 kb on - strand, within QEN71_RS05165at 1136.590 kb on - strand, within QEN71_RS05165at 1136.658 kb on + strand, within QEN71_RS05165at 1136.658 kb on + strand, within QEN71_RS05165at 1136.658 kb on + strand, within QEN71_RS05165at 1136.658 kb on + strand, within QEN71_RS05165at 1136.658 kb on + strand, within QEN71_RS05165at 1136.659 kb on - strand, within QEN71_RS05165at 1136.659 kb on - strand, within QEN71_RS05165at 1136.659 kb on - strand, within QEN71_RS05165at 1136.659 kb on - strand, within QEN71_RS05165at 1136.661 kb on + strand, within QEN71_RS05165at 1136.661 kb on + strand, within QEN71_RS05165at 1136.662 kb on - strand, within QEN71_RS05165at 1136.662 kb on - strand, within QEN71_RS05165at 1136.662 kb on - strand, within QEN71_RS05165at 1136.662 kb on - strand, within QEN71_RS05165at 1136.662 kb on - strand, within QEN71_RS05165at 1136.682 kb on + strand, within QEN71_RS05165at 1136.682 kb on + strand, within QEN71_RS05165at 1136.682 kb on + strand, within QEN71_RS05165at 1136.682 kb on + strand, within QEN71_RS05165at 1136.682 kb on + strand, within QEN71_RS05165at 1136.683 kb on - strand, within QEN71_RS05165at 1136.683 kb on - strand, within QEN71_RS05165at 1136.683 kb on - strand, within QEN71_RS05165at 1136.683 kb on - strand, within QEN71_RS05165at 1136.683 kb on - strand, within QEN71_RS05165at 1136.683 kb on - strand, within QEN71_RS05165at 1136.743 kb on + strand, within QEN71_RS05165at 1136.762 kb on + strand, within QEN71_RS05165at 1136.762 kb on + strand, within QEN71_RS05165at 1136.763 kb on - strandat 1136.875 kb on + strandat 1136.876 kb on - strandat 1136.885 kb on + strandat 1136.885 kb on + strandat 1136.886 kb on - strandat 1136.886 kb on - strandat 1136.886 kb on - strandat 1136.890 kb on + strandat 1136.890 kb on + strandat 1136.890 kb on + strandat 1136.890 kb on + strandat 1136.890 kb on + strandat 1136.891 kb on - strandat 1136.891 kb on - strandat 1136.891 kb on - strandat 1136.891 kb on - strandat 1136.891 kb on - strandat 1136.975 kb on + strandat 1136.975 kb on + strandat 1136.975 kb on + strandat 1136.975 kb on + strandat 1136.975 kb on + strandat 1136.975 kb on + strandat 1136.975 kb on + strandat 1136.975 kb on + strandat 1136.976 kb on - strandat 1136.976 kb on - strandat 1136.976 kb on - strandat 1136.976 kb on - strandat 1137.028 kb on - strand, within QEN71_RS05170at 1137.028 kb on - strand, within QEN71_RS05170at 1137.056 kb on + strand, within QEN71_RS05170at 1137.083 kb on + strand, within QEN71_RS05170at 1137.083 kb on + strand, within QEN71_RS05170at 1137.084 kb on - strand, within QEN71_RS05170at 1137.084 kb on - strand, within QEN71_RS05170at 1137.134 kb on + strand, within QEN71_RS05170at 1137.134 kb on + strand, within QEN71_RS05170at 1137.134 kb on + strand, within QEN71_RS05170at 1137.135 kb on - strand, within QEN71_RS05170at 1137.135 kb on - strand, within QEN71_RS05170at 1137.135 kb on - strand, within QEN71_RS05170at 1137.135 kb on - strand, within QEN71_RS05170at 1137.135 kb on - strand, within QEN71_RS05170at 1137.135 kb on - strand, within QEN71_RS05170at 1137.135 kb on - strand, within QEN71_RS05170at 1137.135 kb on - strand, within QEN71_RS05170at 1137.174 kb on + strand, within QEN71_RS05170at 1137.174 kb on + strand, within QEN71_RS05170at 1137.175 kb on - strand, within QEN71_RS05170at 1137.255 kb on + strand, within QEN71_RS05170at 1137.256 kb on - strand, within QEN71_RS05170at 1137.728 kb on + strand, within QEN71_RS05170at 1137.728 kb on + strand, within QEN71_RS05170at 1137.729 kb on - strand, within QEN71_RS05170at 1137.736 kb on - strand, within QEN71_RS05170at 1138.193 kb on + strandat 1138.194 kb on - strandat 1138.217 kb on + strandat 1138.217 kb on + strandat 1138.243 kb on - strandat 1138.243 kb on - strandat 1138.285 kb on - strandat 1138.341 kb on + strandat 1138.341 kb on + strandat 1138.341 kb on + strandat 1138.341 kb on + strandat 1138.342 kb on - strandat 1138.342 kb on - strandat 1138.342 kb on - strandat 1138.342 kb on - strandat 1138.342 kb on - strandat 1138.418 kb on + strandat 1138.418 kb on + strandat 1138.418 kb on + strandat 1138.418 kb on + strandat 1138.419 kb on - strandat 1138.419 kb on - strandat 1138.419 kb on - strandat 1138.419 kb on - strandat 1138.502 kb on + strand, within QEN71_RS05175at 1138.502 kb on + strand, within QEN71_RS05175at 1138.502 kb on + strand, within QEN71_RS05175at 1138.503 kb on - strand, within QEN71_RS05175at 1138.503 kb on - strand, within QEN71_RS05175at 1138.503 kb on - strand, within QEN71_RS05175at 1138.503 kb on - strand, within QEN71_RS05175at 1138.503 kb on - strand, within QEN71_RS05175at 1138.555 kb on + strand, within QEN71_RS05175at 1138.555 kb on + strand, within QEN71_RS05175at 1138.555 kb on + strand, within QEN71_RS05175at 1138.555 kb on + strand, within QEN71_RS05175at 1138.555 kb on + strand, within QEN71_RS05175at 1138.555 kb on + strand, within QEN71_RS05175at 1138.555 kb on + strand, within QEN71_RS05175at 1138.555 kb on + strand, within QEN71_RS05175at 1138.555 kb on + strand, within QEN71_RS05175at 1138.556 kb on - strand, within QEN71_RS05175at 1138.556 kb on - strand, within QEN71_RS05175at 1138.556 kb on - strand, within QEN71_RS05175at 1138.556 kb on - strand, within QEN71_RS05175at 1138.556 kb on - strand, within QEN71_RS05175at 1138.610 kb on + strand, within QEN71_RS05175at 1138.610 kb on + strand, within QEN71_RS05175at 1138.611 kb on - strand, within QEN71_RS05175at 1138.611 kb on - strand, within QEN71_RS05175at 1138.611 kb on - strand, within QEN71_RS05175at 1138.611 kb on - strand, within QEN71_RS05175at 1138.611 kb on - strand, within QEN71_RS05175at 1138.646 kb on + strand, within QEN71_RS05175at 1138.647 kb on - strand, within QEN71_RS05175at 1138.647 kb on - strand, within QEN71_RS05175at 1138.772 kb on - strand, within QEN71_RS05175at 1138.772 kb on - strand, within QEN71_RS05175at 1139.030 kb on - strand, within QEN71_RS05180at 1139.030 kb on - strand, within QEN71_RS05180at 1139.194 kb on + strand, within QEN71_RS05180at 1139.194 kb on + strand, within QEN71_RS05180at 1139.194 kb on + strand, within QEN71_RS05180at 1139.195 kb on - strand, within QEN71_RS05180at 1139.304 kb on - strand, within QEN71_RS05180

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,136,083 - -0.2
1,136,083 - -1.1
1,136,083 - -0.6
1,136,083 - +0.1
1,136,083 - +1.7
1,136,124 + QEN71_RS05165 0.13 +0.2
1,136,125 - QEN71_RS05165 0.13 +0.4
1,136,125 - QEN71_RS05165 0.13 -0.2
1,136,137 + QEN71_RS05165 0.15 +0.1
1,136,138 - QEN71_RS05165 0.15 +0.5
1,136,138 - QEN71_RS05165 0.15 +2.3
1,136,143 + QEN71_RS05165 0.15 +0.7
1,136,143 + QEN71_RS05165 0.15 -1.1
1,136,143 + QEN71_RS05165 0.15 -0.3
1,136,446 - QEN71_RS05165 0.52 -0.6
1,136,508 + QEN71_RS05165 0.59 -0.1
1,136,508 + QEN71_RS05165 0.59 -0.1
1,136,509 - QEN71_RS05165 0.59 +0.9
1,136,509 - QEN71_RS05165 0.59 +0.1
1,136,589 + QEN71_RS05165 0.69 -2.3
1,136,589 + QEN71_RS05165 0.69 +0.3
1,136,589 + QEN71_RS05165 0.69 -0.1
1,136,590 - QEN71_RS05165 0.69 +0.6
1,136,590 - QEN71_RS05165 0.69 -1.6
1,136,590 - QEN71_RS05165 0.69 -0.0
1,136,590 - QEN71_RS05165 0.69 +0.4
1,136,590 - QEN71_RS05165 0.69 +0.4
1,136,658 + QEN71_RS05165 0.77 -2.1
1,136,658 + QEN71_RS05165 0.77 +1.3
1,136,658 + QEN71_RS05165 0.77 -0.2
1,136,658 + QEN71_RS05165 0.77 -0.9
1,136,658 + QEN71_RS05165 0.77 -0.8
1,136,659 - QEN71_RS05165 0.77 -0.4
1,136,659 - QEN71_RS05165 0.77 +0.2
1,136,659 - QEN71_RS05165 0.77 +0.0
1,136,659 - QEN71_RS05165 0.77 -1.1
1,136,661 + QEN71_RS05165 0.78 -1.2
1,136,661 + QEN71_RS05165 0.78 -1.2
1,136,662 - QEN71_RS05165 0.78 -0.7
1,136,662 - QEN71_RS05165 0.78 -0.3
1,136,662 - QEN71_RS05165 0.78 +0.0
1,136,662 - QEN71_RS05165 0.78 +0.1
1,136,662 - QEN71_RS05165 0.78 +1.9
1,136,682 + QEN71_RS05165 0.80 +0.3
1,136,682 + QEN71_RS05165 0.80 +0.1
1,136,682 + QEN71_RS05165 0.80 -2.9
1,136,682 + QEN71_RS05165 0.80 +0.4
1,136,682 + QEN71_RS05165 0.80 +0.5
1,136,683 - QEN71_RS05165 0.80 +0.1
1,136,683 - QEN71_RS05165 0.80 -0.2
1,136,683 - QEN71_RS05165 0.80 -0.1
1,136,683 - QEN71_RS05165 0.80 +0.2
1,136,683 - QEN71_RS05165 0.80 +0.1
1,136,683 - QEN71_RS05165 0.80 +0.9
1,136,743 + QEN71_RS05165 0.88 -0.6
1,136,762 + QEN71_RS05165 0.90 -0.6
1,136,762 + QEN71_RS05165 0.90 -0.7
1,136,763 - +0.8
1,136,875 + -0.7
1,136,876 - -1.2
1,136,885 + +1.9
1,136,885 + -1.2
1,136,886 - -2.1
1,136,886 - -1.4
1,136,886 - +0.6
1,136,890 + -0.1
1,136,890 + -0.4
1,136,890 + -0.4
1,136,890 + -0.4
1,136,890 + +0.6
1,136,891 - -1.5
1,136,891 - +0.6
1,136,891 - +1.4
1,136,891 - +0.2
1,136,891 - -1.2
1,136,975 + +1.4
1,136,975 + +0.9
1,136,975 + -0.1
1,136,975 + -0.4
1,136,975 + -1.1
1,136,975 + -0.4
1,136,975 + -1.8
1,136,975 + +0.4
1,136,976 - -0.1
1,136,976 - +0.4
1,136,976 - -1.2
1,136,976 - +0.1
1,137,028 - QEN71_RS05170 0.10 -0.0
1,137,028 - QEN71_RS05170 0.10 +2.8
1,137,056 + QEN71_RS05170 0.12 -0.3
1,137,083 + QEN71_RS05170 0.14 +0.3
1,137,083 + QEN71_RS05170 0.14 -0.6
1,137,084 - QEN71_RS05170 0.14 -0.8
1,137,084 - QEN71_RS05170 0.14 -0.4
1,137,134 + QEN71_RS05170 0.18 -0.2
1,137,134 + QEN71_RS05170 0.18 -0.6
1,137,134 + QEN71_RS05170 0.18 +0.2
1,137,135 - QEN71_RS05170 0.18 -1.7
1,137,135 - QEN71_RS05170 0.18 -1.3
1,137,135 - QEN71_RS05170 0.18 -0.5
1,137,135 - QEN71_RS05170 0.18 +0.6
1,137,135 - QEN71_RS05170 0.18 -1.6
1,137,135 - QEN71_RS05170 0.18 -0.4
1,137,135 - QEN71_RS05170 0.18 +0.3
1,137,135 - QEN71_RS05170 0.18 -0.6
1,137,174 + QEN71_RS05170 0.20 -0.2
1,137,174 + QEN71_RS05170 0.20 +0.9
1,137,175 - QEN71_RS05170 0.20 -1.6
1,137,255 + QEN71_RS05170 0.26 -0.3
1,137,256 - QEN71_RS05170 0.26 -0.6
1,137,728 + QEN71_RS05170 0.59 +0.0
1,137,728 + QEN71_RS05170 0.59 -0.4
1,137,729 - QEN71_RS05170 0.59 -1.2
1,137,736 - QEN71_RS05170 0.60 -0.3
1,138,193 + -1.4
1,138,194 - -0.0
1,138,217 + +0.2
1,138,217 + -0.6
1,138,243 - +0.4
1,138,243 - +0.2
1,138,285 - -0.1
1,138,341 + -0.2
1,138,341 + +0.3
1,138,341 + -1.1
1,138,341 + -0.4
1,138,342 - -0.1
1,138,342 - +0.6
1,138,342 - +0.1
1,138,342 - -0.1
1,138,342 - -1.0
1,138,418 + -0.8
1,138,418 + -0.5
1,138,418 + +0.6
1,138,418 + +2.3
1,138,419 - -0.8
1,138,419 - -0.8
1,138,419 - -0.4
1,138,419 - -0.4
1,138,502 + QEN71_RS05175 0.18 -0.6
1,138,502 + QEN71_RS05175 0.18 +1.2
1,138,502 + QEN71_RS05175 0.18 +0.9
1,138,503 - QEN71_RS05175 0.19 -1.5
1,138,503 - QEN71_RS05175 0.19 +0.3
1,138,503 - QEN71_RS05175 0.19 -1.3
1,138,503 - QEN71_RS05175 0.19 +0.0
1,138,503 - QEN71_RS05175 0.19 -0.4
1,138,555 + QEN71_RS05175 0.31 +0.5
1,138,555 + QEN71_RS05175 0.31 -0.0
1,138,555 + QEN71_RS05175 0.31 -0.1
1,138,555 + QEN71_RS05175 0.31 -0.9
1,138,555 + QEN71_RS05175 0.31 -0.9
1,138,555 + QEN71_RS05175 0.31 +0.2
1,138,555 + QEN71_RS05175 0.31 -1.2
1,138,555 + QEN71_RS05175 0.31 +0.4
1,138,555 + QEN71_RS05175 0.31 -0.1
1,138,556 - QEN71_RS05175 0.31 -1.8
1,138,556 - QEN71_RS05175 0.31 +1.8
1,138,556 - QEN71_RS05175 0.31 -0.8
1,138,556 - QEN71_RS05175 0.31 +0.2
1,138,556 - QEN71_RS05175 0.31 -0.5
1,138,610 + QEN71_RS05175 0.43 -0.5
1,138,610 + QEN71_RS05175 0.43 -0.6
1,138,611 - QEN71_RS05175 0.44 +0.7
1,138,611 - QEN71_RS05175 0.44 +0.2
1,138,611 - QEN71_RS05175 0.44 +2.4
1,138,611 - QEN71_RS05175 0.44 -0.4
1,138,611 - QEN71_RS05175 0.44 -0.0
1,138,646 + QEN71_RS05175 0.52 +0.0
1,138,647 - QEN71_RS05175 0.52 -2.2
1,138,647 - QEN71_RS05175 0.52 -0.5
1,138,772 - QEN71_RS05175 0.81 -0.6
1,138,772 - QEN71_RS05175 0.81 -0.6
1,139,030 - QEN71_RS05180 0.29 -2.3
1,139,030 - QEN71_RS05180 0.29 +1.8
1,139,194 + QEN71_RS05180 0.56 -1.1
1,139,194 + QEN71_RS05180 0.56 -0.9
1,139,194 + QEN71_RS05180 0.56 -0.3
1,139,195 - QEN71_RS05180 0.56 -0.1
1,139,304 - QEN71_RS05180 0.74 +1.2

Or see this region's nucleotide sequence