Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS04405 and QEN71_RS04410 are separated by 230 nucleotides QEN71_RS04410 and QEN71_RS04415 overlap by 4 nucleotides QEN71_RS04415 and QEN71_RS04420 are separated by 182 nucleotides
QEN71_RS04405: QEN71_RS04405 - DUF4088 family protein, at 972,404 to 973,177
_RS04405
QEN71_RS04410: QEN71_RS04410 - AzlD domain-containing protein, at 973,408 to 973,731
_RS04410
QEN71_RS04415: QEN71_RS04415 - AzlC family ABC transporter permease, at 973,728 to 974,399
_RS04415
QEN71_RS04420: QEN71_RS04420 - AraC family transcriptional regulator, at 974,582 to 975,409
_RS04420
Position (kb) 973
974
975 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 972.976 kb on - strand, within QEN71_RS04405 at 972.976 kb on - strand, within QEN71_RS04405 at 972.976 kb on - strand, within QEN71_RS04405 at 972.976 kb on - strand, within QEN71_RS04405 at 973.088 kb on + strand, within QEN71_RS04405 at 973.088 kb on + strand, within QEN71_RS04405 at 973.088 kb on + strand, within QEN71_RS04405 at 973.088 kb on + strand, within QEN71_RS04405 at 973.088 kb on + strand, within QEN71_RS04405 at 973.088 kb on + strand, within QEN71_RS04405 at 973.088 kb on + strand, within QEN71_RS04405 at 973.088 kb on + strand, within QEN71_RS04405 at 973.088 kb on + strand, within QEN71_RS04405 at 973.088 kb on + strand, within QEN71_RS04405 at 973.088 kb on + strand, within QEN71_RS04405 at 973.089 kb on - strand, within QEN71_RS04405 at 973.089 kb on - strand, within QEN71_RS04405 at 973.089 kb on - strand, within QEN71_RS04405 at 973.089 kb on - strand, within QEN71_RS04405 at 973.089 kb on - strand, within QEN71_RS04405 at 973.166 kb on - strand at 973.166 kb on - strand at 973.166 kb on - strand at 973.166 kb on - strand at 973.182 kb on + strand at 973.208 kb on - strand at 973.398 kb on + strand at 973.399 kb on - strand at 973.399 kb on - strand at 973.399 kb on - strand at 973.724 kb on + strand at 973.724 kb on + strand at 973.724 kb on + strand at 973.724 kb on + strand at 973.724 kb on + strand at 973.724 kb on + strand at 973.724 kb on + strand at 973.724 kb on + strand at 973.724 kb on + strand at 973.724 kb on + strand at 973.724 kb on + strand at 973.724 kb on + strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.725 kb on - strand at 973.831 kb on + strand, within QEN71_RS04415 at 973.831 kb on + strand, within QEN71_RS04415 at 973.831 kb on + strand, within QEN71_RS04415 at 973.831 kb on + strand, within QEN71_RS04415 at 973.831 kb on + strand, within QEN71_RS04415 at 973.832 kb on - strand, within QEN71_RS04415 at 973.888 kb on + strand, within QEN71_RS04415 at 973.888 kb on + strand, within QEN71_RS04415 at 973.889 kb on - strand, within QEN71_RS04415 at 974.026 kb on + strand, within QEN71_RS04415 at 974.027 kb on - strand, within QEN71_RS04415 at 974.027 kb on - strand, within QEN71_RS04415 at 974.053 kb on + strand, within QEN71_RS04415 at 974.053 kb on + strand, within QEN71_RS04415 at 974.053 kb on + strand, within QEN71_RS04415 at 974.053 kb on + strand, within QEN71_RS04415 at 974.053 kb on + strand, within QEN71_RS04415 at 974.053 kb on + strand, within QEN71_RS04415 at 974.053 kb on + strand, within QEN71_RS04415 at 974.053 kb on + strand, within QEN71_RS04415 at 974.053 kb on + strand, within QEN71_RS04415 at 974.053 kb on + strand, within QEN71_RS04415 at 974.053 kb on + strand, within QEN71_RS04415 at 974.054 kb on - strand, within QEN71_RS04415 at 974.054 kb on - strand, within QEN71_RS04415 at 974.054 kb on - strand, within QEN71_RS04415 at 974.054 kb on - strand, within QEN71_RS04415 at 974.054 kb on - strand, within QEN71_RS04415 at 974.056 kb on + strand, within QEN71_RS04415 at 974.056 kb on + strand, within QEN71_RS04415 at 974.056 kb on + strand, within QEN71_RS04415 at 974.056 kb on + strand, within QEN71_RS04415 at 974.057 kb on - strand, within QEN71_RS04415 at 974.057 kb on - strand, within QEN71_RS04415 at 974.057 kb on - strand, within QEN71_RS04415 at 974.089 kb on + strand, within QEN71_RS04415 at 974.174 kb on - strand, within QEN71_RS04415 at 974.174 kb on - strand, within QEN71_RS04415 at 974.245 kb on + strand, within QEN71_RS04415 at 974.245 kb on + strand, within QEN71_RS04415 at 974.246 kb on - strand, within QEN71_RS04415 at 974.246 kb on - strand, within QEN71_RS04415 at 974.246 kb on - strand, within QEN71_RS04415 at 974.365 kb on + strand at 974.365 kb on + strand at 974.365 kb on + strand at 974.365 kb on + strand at 974.365 kb on + strand at 974.366 kb on - strand at 974.366 kb on - strand at 974.366 kb on - strand at 974.495 kb on + strand at 974.495 kb on + strand at 974.495 kb on + strand at 974.496 kb on - strand at 974.496 kb on - strand at 974.522 kb on + strand at 974.522 kb on + strand at 974.522 kb on + strand at 974.523 kb on - strand at 974.523 kb on - strand at 974.523 kb on - strand at 974.523 kb on - strand at 974.523 kb on - strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.545 kb on + strand at 974.546 kb on - strand at 974.546 kb on - strand at 974.546 kb on - strand at 974.546 kb on - strand at 974.546 kb on - strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.620 kb on + strand at 974.621 kb on - strand at 974.924 kb on - strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.029 kb on + strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.030 kb on - strand, within QEN71_RS04420 at 975.032 kb on - strand, within QEN71_RS04420 at 975.032 kb on - strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.135 kb on + strand, within QEN71_RS04420 at 975.136 kb on - strand, within QEN71_RS04420 at 975.136 kb on - strand, within QEN71_RS04420 at 975.136 kb on - strand, within QEN71_RS04420 at 975.136 kb on - strand, within QEN71_RS04420 at 975.136 kb on - strand, within QEN71_RS04420 at 975.247 kb on - strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.252 kb on + strand, within QEN71_RS04420 at 975.253 kb on - strand, within QEN71_RS04420 at 975.253 kb on - strand, within QEN71_RS04420 at 975.253 kb on - strand, within QEN71_RS04420 at 975.253 kb on - strand, within QEN71_RS04420 at 975.253 kb on - strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.288 kb on + strand, within QEN71_RS04420 at 975.289 kb on - strand, within QEN71_RS04420 at 975.289 kb on - strand, within QEN71_RS04420 at 975.289 kb on - strand, within QEN71_RS04420 at 975.289 kb on - strand, within QEN71_RS04420 at 975.327 kb on + strand at 975.328 kb on - strand at 975.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 972,976 - QEN71_RS04405 0.74 +0.6 972,976 - QEN71_RS04405 0.74 -0.0 972,976 - QEN71_RS04405 0.74 -0.4 972,976 - QEN71_RS04405 0.74 +0.0 973,088 + QEN71_RS04405 0.88 -0.6 973,088 + QEN71_RS04405 0.88 -0.4 973,088 + QEN71_RS04405 0.88 +0.8 973,088 + QEN71_RS04405 0.88 +1.2 973,088 + QEN71_RS04405 0.88 -0.3 973,088 + QEN71_RS04405 0.88 +0.4 973,088 + QEN71_RS04405 0.88 -0.1 973,088 + QEN71_RS04405 0.88 +0.7 973,088 + QEN71_RS04405 0.88 +0.8 973,088 + QEN71_RS04405 0.88 -0.4 973,088 + QEN71_RS04405 0.88 -1.4 973,089 - QEN71_RS04405 0.89 +1.0 973,089 - QEN71_RS04405 0.89 +0.2 973,089 - QEN71_RS04405 0.89 +0.8 973,089 - QEN71_RS04405 0.89 -0.5 973,089 - QEN71_RS04405 0.89 +0.2 973,166 - -1.0 973,166 - +1.0 973,166 - -1.4 973,166 - +2.0 973,182 + +0.6 973,208 - -1.3 973,398 + +0.3 973,399 - +1.1 973,399 - +0.0 973,399 - -1.7 973,724 + -2.1 973,724 + -0.5 973,724 + +1.2 973,724 + +0.4 973,724 + -0.2 973,724 + +0.5 973,724 + +0.1 973,724 + +1.7 973,724 + +0.4 973,724 + -0.6 973,724 + -0.5 973,724 + -0.7 973,725 - -0.8 973,725 - +1.3 973,725 - -0.3 973,725 - -2.0 973,725 - -2.0 973,725 - -0.2 973,725 - -0.7 973,725 - -1.0 973,725 - -0.6 973,725 - -0.0 973,725 - -0.5 973,725 - -0.3 973,725 - +0.3 973,725 - -0.8 973,725 - -0.8 973,725 - -0.4 973,725 - +0.4 973,725 - +0.5 973,725 - -0.5 973,725 - -1.1 973,725 - -0.7 973,725 - +1.1 973,725 - -0.5 973,725 - -0.2 973,725 - +0.8 973,831 + QEN71_RS04415 0.15 +0.1 973,831 + QEN71_RS04415 0.15 +0.7 973,831 + QEN71_RS04415 0.15 +0.2 973,831 + QEN71_RS04415 0.15 +0.3 973,831 + QEN71_RS04415 0.15 -0.1 973,832 - QEN71_RS04415 0.15 -0.5 973,888 + QEN71_RS04415 0.24 +0.2 973,888 + QEN71_RS04415 0.24 -2.5 973,889 - QEN71_RS04415 0.24 +1.7 974,026 + QEN71_RS04415 0.44 +0.6 974,027 - QEN71_RS04415 0.44 -0.6 974,027 - QEN71_RS04415 0.44 -1.1 974,053 + QEN71_RS04415 0.48 -0.1 974,053 + QEN71_RS04415 0.48 -0.4 974,053 + QEN71_RS04415 0.48 -0.8 974,053 + QEN71_RS04415 0.48 +0.2 974,053 + QEN71_RS04415 0.48 -1.9 974,053 + QEN71_RS04415 0.48 -0.2 974,053 + QEN71_RS04415 0.48 -1.2 974,053 + QEN71_RS04415 0.48 -0.6 974,053 + QEN71_RS04415 0.48 +0.2 974,053 + QEN71_RS04415 0.48 -0.5 974,053 + QEN71_RS04415 0.48 -0.6 974,054 - QEN71_RS04415 0.49 +0.2 974,054 - QEN71_RS04415 0.49 -2.7 974,054 - QEN71_RS04415 0.49 +0.4 974,054 - QEN71_RS04415 0.49 +2.2 974,054 - QEN71_RS04415 0.49 +0.2 974,056 + QEN71_RS04415 0.49 -0.2 974,056 + QEN71_RS04415 0.49 +0.9 974,056 + QEN71_RS04415 0.49 -0.0 974,056 + QEN71_RS04415 0.49 +0.7 974,057 - QEN71_RS04415 0.49 +0.7 974,057 - QEN71_RS04415 0.49 +0.1 974,057 - QEN71_RS04415 0.49 +0.8 974,089 + QEN71_RS04415 0.54 +1.6 974,174 - QEN71_RS04415 0.66 -0.1 974,174 - QEN71_RS04415 0.66 -1.5 974,245 + QEN71_RS04415 0.77 +0.4 974,245 + QEN71_RS04415 0.77 -0.8 974,246 - QEN71_RS04415 0.77 +1.2 974,246 - QEN71_RS04415 0.77 -0.1 974,246 - QEN71_RS04415 0.77 -1.0 974,365 + +0.5 974,365 + -2.1 974,365 + -1.6 974,365 + -0.2 974,365 + -0.7 974,366 - -0.0 974,366 - +0.9 974,366 - -1.0 974,495 + -0.6 974,495 + +0.0 974,495 + +0.3 974,496 - -0.3 974,496 - -0.3 974,522 + -1.2 974,522 + -0.9 974,522 + -1.0 974,523 - +0.8 974,523 - -0.5 974,523 - -0.0 974,523 - +0.3 974,523 - +1.5 974,545 + -0.3 974,545 + -0.8 974,545 + -0.1 974,545 + -0.4 974,545 + -1.2 974,545 + -2.1 974,545 + +0.5 974,545 + -0.0 974,545 + -0.9 974,546 - +0.1 974,546 - +0.0 974,546 - +2.2 974,546 - +0.6 974,546 - -0.0 974,620 + +0.3 974,620 + -0.8 974,620 + -0.0 974,620 + -0.5 974,620 + -0.3 974,620 + -0.4 974,620 + -1.3 974,620 + -1.5 974,621 - +0.4 974,924 - QEN71_RS04420 0.41 +0.4 975,029 + QEN71_RS04420 0.54 +0.8 975,029 + QEN71_RS04420 0.54 +1.2 975,029 + QEN71_RS04420 0.54 +0.5 975,029 + QEN71_RS04420 0.54 +0.7 975,029 + QEN71_RS04420 0.54 -0.7 975,029 + QEN71_RS04420 0.54 +0.6 975,030 - QEN71_RS04420 0.54 -0.3 975,030 - QEN71_RS04420 0.54 -0.5 975,030 - QEN71_RS04420 0.54 -0.9 975,030 - QEN71_RS04420 0.54 -1.3 975,030 - QEN71_RS04420 0.54 +0.1 975,030 - QEN71_RS04420 0.54 +0.1 975,032 - QEN71_RS04420 0.54 -0.2 975,032 - QEN71_RS04420 0.54 -0.3 975,135 + QEN71_RS04420 0.67 -2.2 975,135 + QEN71_RS04420 0.67 +1.1 975,135 + QEN71_RS04420 0.67 +0.4 975,135 + QEN71_RS04420 0.67 +1.0 975,135 + QEN71_RS04420 0.67 -0.3 975,135 + QEN71_RS04420 0.67 -0.3 975,135 + QEN71_RS04420 0.67 -2.9 975,135 + QEN71_RS04420 0.67 -0.0 975,135 + QEN71_RS04420 0.67 +2.0 975,135 + QEN71_RS04420 0.67 -0.5 975,136 - QEN71_RS04420 0.67 +1.0 975,136 - QEN71_RS04420 0.67 -1.7 975,136 - QEN71_RS04420 0.67 +0.8 975,136 - QEN71_RS04420 0.67 -0.2 975,136 - QEN71_RS04420 0.67 -0.3 975,247 - QEN71_RS04420 0.80 -0.6 975,252 + QEN71_RS04420 0.81 +0.1 975,252 + QEN71_RS04420 0.81 +1.4 975,252 + QEN71_RS04420 0.81 +0.1 975,252 + QEN71_RS04420 0.81 -0.6 975,252 + QEN71_RS04420 0.81 -0.7 975,252 + QEN71_RS04420 0.81 -0.2 975,252 + QEN71_RS04420 0.81 -0.0 975,253 - QEN71_RS04420 0.81 -0.7 975,253 - QEN71_RS04420 0.81 +0.4 975,253 - QEN71_RS04420 0.81 -1.6 975,253 - QEN71_RS04420 0.81 +0.8 975,253 - QEN71_RS04420 0.81 -0.0 975,288 + QEN71_RS04420 0.85 -0.2 975,288 + QEN71_RS04420 0.85 +0.8 975,288 + QEN71_RS04420 0.85 +0.0 975,288 + QEN71_RS04420 0.85 -0.2 975,288 + QEN71_RS04420 0.85 -0.1 975,288 + QEN71_RS04420 0.85 +0.3 975,288 + QEN71_RS04420 0.85 +1.7 975,289 - QEN71_RS04420 0.85 -1.5 975,289 - QEN71_RS04420 0.85 +0.6 975,289 - QEN71_RS04420 0.85 -0.8 975,289 - QEN71_RS04420 0.85 +0.3 975,327 + +0.7 975,328 - +1.1 975,328 - +0.2
Or see this region's nucleotide sequence