Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03090

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03085 and QEN71_RS03090 are separated by 189 nucleotidesQEN71_RS03090 and QEN71_RS03095 are separated by 2 nucleotides QEN71_RS03085: QEN71_RS03085 - DNA repair protein RadC, at 689,303 to 690,031 _RS03085 QEN71_RS03090: QEN71_RS03090 - peptidylprolyl isomerase, at 690,221 to 690,676 _RS03090 QEN71_RS03095: QEN71_RS03095 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 690,679 to 691,638 _RS03095 Position (kb) 690 691Strain fitness (log2 ratio) -2 -1 0 1 2at 689.241 kb on - strandat 689.241 kb on - strandat 689.241 kb on - strandat 689.241 kb on - strandat 689.241 kb on - strandat 689.241 kb on - strandat 689.241 kb on - strandat 689.265 kb on + strandat 689.265 kb on + strandat 689.265 kb on + strandat 689.265 kb on + strandat 689.266 kb on - strandat 689.266 kb on - strandat 689.266 kb on - strandat 689.458 kb on + strand, within QEN71_RS03085at 689.458 kb on + strand, within QEN71_RS03085at 689.458 kb on + strand, within QEN71_RS03085at 689.458 kb on + strand, within QEN71_RS03085at 689.459 kb on - strand, within QEN71_RS03085at 689.520 kb on + strand, within QEN71_RS03085at 689.520 kb on + strand, within QEN71_RS03085at 689.521 kb on - strand, within QEN71_RS03085at 689.613 kb on + strand, within QEN71_RS03085at 689.613 kb on + strand, within QEN71_RS03085at 689.613 kb on + strand, within QEN71_RS03085at 689.613 kb on + strand, within QEN71_RS03085at 689.614 kb on - strand, within QEN71_RS03085at 689.614 kb on - strand, within QEN71_RS03085at 689.614 kb on - strand, within QEN71_RS03085at 689.614 kb on - strand, within QEN71_RS03085at 689.614 kb on - strand, within QEN71_RS03085at 689.643 kb on + strand, within QEN71_RS03085at 689.643 kb on + strand, within QEN71_RS03085at 689.643 kb on + strand, within QEN71_RS03085at 689.643 kb on + strand, within QEN71_RS03085at 689.644 kb on - strand, within QEN71_RS03085at 689.644 kb on - strand, within QEN71_RS03085at 689.644 kb on - strand, within QEN71_RS03085at 689.644 kb on - strand, within QEN71_RS03085at 689.854 kb on + strand, within QEN71_RS03085at 689.854 kb on + strand, within QEN71_RS03085at 689.854 kb on + strand, within QEN71_RS03085at 689.854 kb on + strand, within QEN71_RS03085at 689.854 kb on + strand, within QEN71_RS03085at 689.854 kb on + strand, within QEN71_RS03085at 689.854 kb on + strand, within QEN71_RS03085at 689.854 kb on + strand, within QEN71_RS03085at 689.854 kb on + strand, within QEN71_RS03085at 689.854 kb on + strand, within QEN71_RS03085at 689.855 kb on - strand, within QEN71_RS03085at 689.855 kb on - strand, within QEN71_RS03085at 689.855 kb on - strand, within QEN71_RS03085at 689.855 kb on - strand, within QEN71_RS03085at 689.855 kb on - strand, within QEN71_RS03085at 689.855 kb on - strand, within QEN71_RS03085at 689.855 kb on - strand, within QEN71_RS03085at 689.855 kb on - strand, within QEN71_RS03085at 689.947 kb on + strand, within QEN71_RS03085at 689.947 kb on + strand, within QEN71_RS03085at 689.947 kb on + strand, within QEN71_RS03085at 689.948 kb on - strand, within QEN71_RS03085at 689.948 kb on - strand, within QEN71_RS03085at 689.982 kb on - strandat 690.017 kb on + strandat 690.017 kb on + strandat 690.017 kb on + strandat 690.018 kb on - strandat 690.018 kb on - strandat 690.035 kb on + strandat 690.035 kb on + strandat 690.035 kb on + strandat 690.035 kb on + strandat 690.035 kb on + strandat 690.036 kb on - strandat 690.036 kb on - strandat 690.036 kb on - strandat 690.036 kb on - strandat 690.036 kb on - strandat 690.036 kb on - strandat 690.036 kb on - strandat 690.036 kb on - strandat 690.036 kb on - strandat 690.036 kb on - strandat 690.036 kb on - strandat 690.036 kb on - strandat 690.103 kb on + strandat 690.103 kb on + strandat 690.104 kb on - strandat 690.104 kb on - strandat 690.104 kb on - strandat 690.104 kb on - strandat 690.112 kb on + strandat 690.112 kb on + strandat 690.112 kb on + strandat 690.112 kb on + strandat 690.112 kb on + strandat 690.112 kb on + strandat 690.112 kb on + strandat 690.113 kb on - strandat 690.113 kb on - strandat 690.113 kb on - strandat 690.113 kb on - strandat 690.113 kb on - strandat 690.113 kb on - strandat 690.113 kb on - strandat 690.117 kb on + strandat 690.117 kb on + strandat 690.117 kb on + strandat 690.117 kb on + strandat 690.117 kb on + strandat 690.117 kb on + strandat 690.423 kb on + strand, within QEN71_RS03090at 690.423 kb on + strand, within QEN71_RS03090at 690.423 kb on + strand, within QEN71_RS03090at 690.423 kb on + strand, within QEN71_RS03090at 690.423 kb on + strand, within QEN71_RS03090at 690.424 kb on - strand, within QEN71_RS03090at 690.566 kb on + strand, within QEN71_RS03090at 690.654 kb on + strandat 690.654 kb on + strandat 690.674 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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689,241 - +0.9
689,241 - -1.0
689,241 - +1.6
689,241 - -0.3
689,241 - -0.2
689,241 - +0.1
689,241 - -0.6
689,265 + -1.8
689,265 + +0.8
689,265 + -0.3
689,265 + -0.6
689,266 - -0.4
689,266 - +0.2
689,266 - +0.9
689,458 + QEN71_RS03085 0.21 +0.6
689,458 + QEN71_RS03085 0.21 -0.9
689,458 + QEN71_RS03085 0.21 +0.6
689,458 + QEN71_RS03085 0.21 +1.0
689,459 - QEN71_RS03085 0.21 +0.0
689,520 + QEN71_RS03085 0.30 +0.7
689,520 + QEN71_RS03085 0.30 +1.8
689,521 - QEN71_RS03085 0.30 -0.4
689,613 + QEN71_RS03085 0.43 +0.7
689,613 + QEN71_RS03085 0.43 -0.1
689,613 + QEN71_RS03085 0.43 -0.8
689,613 + QEN71_RS03085 0.43 -1.5
689,614 - QEN71_RS03085 0.43 +2.1
689,614 - QEN71_RS03085 0.43 -0.8
689,614 - QEN71_RS03085 0.43 -0.7
689,614 - QEN71_RS03085 0.43 -1.0
689,614 - QEN71_RS03085 0.43 +0.3
689,643 + QEN71_RS03085 0.47 +0.5
689,643 + QEN71_RS03085 0.47 -0.4
689,643 + QEN71_RS03085 0.47 +1.1
689,643 + QEN71_RS03085 0.47 +0.1
689,644 - QEN71_RS03085 0.47 +0.2
689,644 - QEN71_RS03085 0.47 +1.6
689,644 - QEN71_RS03085 0.47 +0.0
689,644 - QEN71_RS03085 0.47 -0.8
689,854 + QEN71_RS03085 0.76 +2.6
689,854 + QEN71_RS03085 0.76 -0.4
689,854 + QEN71_RS03085 0.76 -0.8
689,854 + QEN71_RS03085 0.76 +1.5
689,854 + QEN71_RS03085 0.76 -0.3
689,854 + QEN71_RS03085 0.76 +0.5
689,854 + QEN71_RS03085 0.76 +0.7
689,854 + QEN71_RS03085 0.76 -1.3
689,854 + QEN71_RS03085 0.76 -1.4
689,854 + QEN71_RS03085 0.76 -0.0
689,855 - QEN71_RS03085 0.76 -1.1
689,855 - QEN71_RS03085 0.76 -1.7
689,855 - QEN71_RS03085 0.76 -1.1
689,855 - QEN71_RS03085 0.76 -0.9
689,855 - QEN71_RS03085 0.76 -1.1
689,855 - QEN71_RS03085 0.76 +0.1
689,855 - QEN71_RS03085 0.76 +0.1
689,855 - QEN71_RS03085 0.76 +0.3
689,947 + QEN71_RS03085 0.88 +0.1
689,947 + QEN71_RS03085 0.88 +1.8
689,947 + QEN71_RS03085 0.88 -0.9
689,948 - QEN71_RS03085 0.88 +0.3
689,948 - QEN71_RS03085 0.88 -1.0
689,982 - +1.2
690,017 + -0.3
690,017 + -0.3
690,017 + +0.5
690,018 - -0.8
690,018 - -0.6
690,035 + -0.3
690,035 + +0.1
690,035 + +0.7
690,035 + -0.6
690,035 + -0.4
690,036 - +0.1
690,036 - +0.1
690,036 - +0.4
690,036 - -0.3
690,036 - -0.2
690,036 - +0.4
690,036 - +0.6
690,036 - +0.1
690,036 - +0.5
690,036 - -0.6
690,036 - -0.4
690,036 - -1.3
690,103 + +0.8
690,103 + -1.0
690,104 - +0.6
690,104 - -1.1
690,104 - +0.0
690,104 - -0.3
690,112 + -1.0
690,112 + -0.3
690,112 + -0.8
690,112 + +1.5
690,112 + +1.4
690,112 + -1.8
690,112 + -0.5
690,113 - -0.1
690,113 - +0.5
690,113 - +0.9
690,113 - +0.3
690,113 - -0.4
690,113 - +0.5
690,113 - -1.7
690,117 + +0.0
690,117 + -0.3
690,117 + -0.0
690,117 + +0.4
690,117 + -0.4
690,117 + +0.7
690,423 + QEN71_RS03090 0.44 +0.5
690,423 + QEN71_RS03090 0.44 +0.2
690,423 + QEN71_RS03090 0.44 -0.3
690,423 + QEN71_RS03090 0.44 -1.7
690,423 + QEN71_RS03090 0.44 -0.5
690,424 - QEN71_RS03090 0.45 -1.7
690,566 + QEN71_RS03090 0.76 -0.4
690,654 + -1.3
690,654 + -0.5
690,674 + +0.2

Or see this region's nucleotide sequence