Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS44085 and QEN71_RS44090 are separated by 4 nucleotides QEN71_RS44090 and QEN71_RS44095 are separated by 2 nucleotides QEN71_RS44095 and QEN71_RS44100 overlap by 4 nucleotides
QEN71_RS44085: QEN71_RS44085 - type II secretory pathway protein, at 291,706 to 293,337
_RS44085
QEN71_RS44090: QEN71_RS44090 - toxin co-regulated pilus biosynthesis Q family protein, at 293,342 to 293,962
_RS44090
QEN71_RS44095: QEN71_RS44095 - lytic transglycosylase domain-containing protein, at 293,965 to 294,393
_RS44095
QEN71_RS44100: QEN71_RS44100 - TrbG/VirB9 family P-type conjugative transfer protein, at 294,390 to 295,667
_RS44100
Position (kb) 293
294 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 292.351 kb on - strand, within QEN71_RS44085 at 292.351 kb on - strand, within QEN71_RS44085 at 292.351 kb on - strand, within QEN71_RS44085 at 292.405 kb on + strand, within QEN71_RS44085 at 292.518 kb on + strand, within QEN71_RS44085 at 292.656 kb on + strand, within QEN71_RS44085 at 292.662 kb on + strand, within QEN71_RS44085 at 292.662 kb on + strand, within QEN71_RS44085 at 292.662 kb on + strand, within QEN71_RS44085 at 292.662 kb on + strand, within QEN71_RS44085 at 292.662 kb on + strand, within QEN71_RS44085 at 292.663 kb on - strand, within QEN71_RS44085 at 292.669 kb on - strand, within QEN71_RS44085 at 292.696 kb on - strand, within QEN71_RS44085 at 292.701 kb on + strand, within QEN71_RS44085 at 292.702 kb on - strand, within QEN71_RS44085 at 292.767 kb on + strand, within QEN71_RS44085 at 292.788 kb on + strand, within QEN71_RS44085 at 292.788 kb on + strand, within QEN71_RS44085 at 292.789 kb on - strand, within QEN71_RS44085 at 292.789 kb on - strand, within QEN71_RS44085 at 292.850 kb on + strand, within QEN71_RS44085 at 292.883 kb on + strand, within QEN71_RS44085 at 292.883 kb on + strand, within QEN71_RS44085 at 292.884 kb on - strand, within QEN71_RS44085 at 292.884 kb on - strand, within QEN71_RS44085 at 292.884 kb on - strand, within QEN71_RS44085 at 293.129 kb on + strand, within QEN71_RS44085 at 293.130 kb on - strand, within QEN71_RS44085 at 293.130 kb on - strand, within QEN71_RS44085 at 293.170 kb on + strand, within QEN71_RS44085 at 293.170 kb on + strand, within QEN71_RS44085 at 293.170 kb on + strand, within QEN71_RS44085 at 293.171 kb on - strand, within QEN71_RS44085 at 293.243 kb on + strand at 293.243 kb on + strand at 293.244 kb on - strand at 293.643 kb on - strand, within QEN71_RS44090 at 293.681 kb on + strand, within QEN71_RS44090 at 293.765 kb on + strand, within QEN71_RS44090 at 293.765 kb on + strand, within QEN71_RS44090 at 293.766 kb on - strand, within QEN71_RS44090 at 293.807 kb on + strand, within QEN71_RS44090 at 293.807 kb on + strand, within QEN71_RS44090 at 293.808 kb on - strand, within QEN71_RS44090 at 293.808 kb on - strand, within QEN71_RS44090 at 293.808 kb on - strand, within QEN71_RS44090 at 293.872 kb on - strand, within QEN71_RS44090 at 293.872 kb on - strand, within QEN71_RS44090 at 293.872 kb on - strand, within QEN71_RS44090 at 293.872 kb on - strand, within QEN71_RS44090 at 293.872 kb on - strand, within QEN71_RS44090 at 293.954 kb on + strand at 293.955 kb on - strand at 293.955 kb on - strand at 293.995 kb on - strand at 293.995 kb on - strand at 293.998 kb on - strand at 294.041 kb on + strand, within QEN71_RS44095 at 294.042 kb on - strand, within QEN71_RS44095 at 294.042 kb on - strand, within QEN71_RS44095 at 294.042 kb on - strand, within QEN71_RS44095 at 294.042 kb on - strand, within QEN71_RS44095 at 294.042 kb on - strand, within QEN71_RS44095 at 294.042 kb on - strand, within QEN71_RS44095 at 294.042 kb on - strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.106 kb on + strand, within QEN71_RS44095 at 294.107 kb on - strand, within QEN71_RS44095 at 294.107 kb on - strand, within QEN71_RS44095 at 294.107 kb on - strand, within QEN71_RS44095 at 294.107 kb on - strand, within QEN71_RS44095 at 294.107 kb on - strand, within QEN71_RS44095 at 294.107 kb on - strand, within QEN71_RS44095 at 294.107 kb on - strand, within QEN71_RS44095 at 294.110 kb on + strand, within QEN71_RS44095 at 294.111 kb on - strand, within QEN71_RS44095 at 294.111 kb on - strand, within QEN71_RS44095 at 294.148 kb on + strand, within QEN71_RS44095 at 294.149 kb on - strand, within QEN71_RS44095 at 294.249 kb on + strand, within QEN71_RS44095 at 294.249 kb on + strand, within QEN71_RS44095 at 294.249 kb on + strand, within QEN71_RS44095 at 294.269 kb on - strand, within QEN71_RS44095 at 294.269 kb on - strand, within QEN71_RS44095 at 294.370 kb on + strand at 294.371 kb on - strand at 294.544 kb on + strand, within QEN71_RS44100 at 294.544 kb on + strand, within QEN71_RS44100 at 294.544 kb on + strand, within QEN71_RS44100 at 294.544 kb on + strand, within QEN71_RS44100 at 294.544 kb on + strand, within QEN71_RS44100 at 294.544 kb on + strand, within QEN71_RS44100 at 294.545 kb on - strand, within QEN71_RS44100 at 294.547 kb on + strand, within QEN71_RS44100 at 294.547 kb on + strand, within QEN71_RS44100 at 294.548 kb on - strand, within QEN71_RS44100 at 294.628 kb on + strand, within QEN71_RS44100 at 294.628 kb on + strand, within QEN71_RS44100 at 294.628 kb on + strand, within QEN71_RS44100 at 294.628 kb on + strand, within QEN71_RS44100 at 294.629 kb on - strand, within QEN71_RS44100 at 294.629 kb on - strand, within QEN71_RS44100 at 294.672 kb on - strand, within QEN71_RS44100 at 294.692 kb on - strand, within QEN71_RS44100 at 294.878 kb on + strand, within QEN71_RS44100
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 292,351 - QEN71_RS44085 0.40 +1.5 292,351 - QEN71_RS44085 0.40 +0.1 292,351 - QEN71_RS44085 0.40 -1.3 292,405 + QEN71_RS44085 0.43 -1.2 292,518 + QEN71_RS44085 0.50 -1.0 292,656 + QEN71_RS44085 0.58 -2.2 292,662 + QEN71_RS44085 0.59 -1.1 292,662 + QEN71_RS44085 0.59 +0.3 292,662 + QEN71_RS44085 0.59 -2.1 292,662 + QEN71_RS44085 0.59 -1.6 292,662 + QEN71_RS44085 0.59 +0.9 292,663 - QEN71_RS44085 0.59 +0.2 292,669 - QEN71_RS44085 0.59 +0.5 292,696 - QEN71_RS44085 0.61 +0.6 292,701 + QEN71_RS44085 0.61 +1.6 292,702 - QEN71_RS44085 0.61 -0.4 292,767 + QEN71_RS44085 0.65 -0.7 292,788 + QEN71_RS44085 0.66 +0.1 292,788 + QEN71_RS44085 0.66 +0.8 292,789 - QEN71_RS44085 0.66 -0.5 292,789 - QEN71_RS44085 0.66 -0.6 292,850 + QEN71_RS44085 0.70 +0.9 292,883 + QEN71_RS44085 0.72 +2.8 292,883 + QEN71_RS44085 0.72 +0.4 292,884 - QEN71_RS44085 0.72 +0.4 292,884 - QEN71_RS44085 0.72 -0.7 292,884 - QEN71_RS44085 0.72 -0.1 293,129 + QEN71_RS44085 0.87 +0.0 293,130 - QEN71_RS44085 0.87 -0.6 293,130 - QEN71_RS44085 0.87 +0.9 293,170 + QEN71_RS44085 0.90 -1.5 293,170 + QEN71_RS44085 0.90 -2.0 293,170 + QEN71_RS44085 0.90 -0.4 293,171 - QEN71_RS44085 0.90 -1.8 293,243 + -1.0 293,243 + -0.4 293,244 - +0.5 293,643 - QEN71_RS44090 0.48 -2.0 293,681 + QEN71_RS44090 0.55 -0.6 293,765 + QEN71_RS44090 0.68 -0.2 293,765 + QEN71_RS44090 0.68 +0.1 293,766 - QEN71_RS44090 0.68 -2.0 293,807 + QEN71_RS44090 0.75 -0.1 293,807 + QEN71_RS44090 0.75 -0.7 293,808 - QEN71_RS44090 0.75 -0.6 293,808 - QEN71_RS44090 0.75 -0.1 293,808 - QEN71_RS44090 0.75 +0.4 293,872 - QEN71_RS44090 0.85 -0.1 293,872 - QEN71_RS44090 0.85 -0.5 293,872 - QEN71_RS44090 0.85 +0.4 293,872 - QEN71_RS44090 0.85 +0.6 293,872 - QEN71_RS44090 0.85 -0.7 293,954 + -0.5 293,955 - +1.1 293,955 - +0.5 293,995 - +0.3 293,995 - -0.4 293,998 - -0.2 294,041 + QEN71_RS44095 0.18 +2.4 294,042 - QEN71_RS44095 0.18 -0.2 294,042 - QEN71_RS44095 0.18 +1.4 294,042 - QEN71_RS44095 0.18 +0.7 294,042 - QEN71_RS44095 0.18 +1.1 294,042 - QEN71_RS44095 0.18 +0.6 294,042 - QEN71_RS44095 0.18 -0.1 294,042 - QEN71_RS44095 0.18 -1.5 294,106 + QEN71_RS44095 0.33 -0.2 294,106 + QEN71_RS44095 0.33 +0.2 294,106 + QEN71_RS44095 0.33 -0.7 294,106 + QEN71_RS44095 0.33 -1.5 294,106 + QEN71_RS44095 0.33 +0.1 294,106 + QEN71_RS44095 0.33 -0.5 294,106 + QEN71_RS44095 0.33 +0.1 294,106 + QEN71_RS44095 0.33 -0.7 294,106 + QEN71_RS44095 0.33 -1.2 294,106 + QEN71_RS44095 0.33 +0.4 294,106 + QEN71_RS44095 0.33 -0.1 294,106 + QEN71_RS44095 0.33 +0.9 294,106 + QEN71_RS44095 0.33 +1.1 294,107 - QEN71_RS44095 0.33 -0.7 294,107 - QEN71_RS44095 0.33 -0.0 294,107 - QEN71_RS44095 0.33 -0.7 294,107 - QEN71_RS44095 0.33 -0.3 294,107 - QEN71_RS44095 0.33 +0.0 294,107 - QEN71_RS44095 0.33 -0.7 294,107 - QEN71_RS44095 0.33 +0.1 294,110 + QEN71_RS44095 0.34 +1.0 294,111 - QEN71_RS44095 0.34 +0.3 294,111 - QEN71_RS44095 0.34 -0.7 294,148 + QEN71_RS44095 0.43 +0.8 294,149 - QEN71_RS44095 0.43 +0.5 294,249 + QEN71_RS44095 0.66 -0.9 294,249 + QEN71_RS44095 0.66 -1.1 294,249 + QEN71_RS44095 0.66 -0.0 294,269 - QEN71_RS44095 0.71 -0.9 294,269 - QEN71_RS44095 0.71 +2.3 294,370 + -0.6 294,371 - -1.3 294,544 + QEN71_RS44100 0.12 -1.8 294,544 + QEN71_RS44100 0.12 -1.5 294,544 + QEN71_RS44100 0.12 +0.1 294,544 + QEN71_RS44100 0.12 -0.2 294,544 + QEN71_RS44100 0.12 +0.5 294,544 + QEN71_RS44100 0.12 +0.3 294,545 - QEN71_RS44100 0.12 +0.8 294,547 + QEN71_RS44100 0.12 -0.2 294,547 + QEN71_RS44100 0.12 -1.4 294,548 - QEN71_RS44100 0.12 -0.5 294,628 + QEN71_RS44100 0.19 -0.2 294,628 + QEN71_RS44100 0.19 -0.8 294,628 + QEN71_RS44100 0.19 -0.2 294,628 + QEN71_RS44100 0.19 +1.1 294,629 - QEN71_RS44100 0.19 -0.7 294,629 - QEN71_RS44100 0.19 +1.1 294,672 - QEN71_RS44100 0.22 +2.2 294,692 - QEN71_RS44100 0.24 +1.0 294,878 + QEN71_RS44100 0.38 -0.6
Or see this region's nucleotide sequence