Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS43785 and QEN71_RS43790 overlap by 4 nucleotides QEN71_RS43790 and QEN71_RS43795 are separated by 82 nucleotides QEN71_RS43795 and QEN71_RS43800 are separated by 31 nucleotides QEN71_RS43800 and QEN71_RS43805 are separated by 132 nucleotides
QEN71_RS43785: QEN71_RS43785 - hypothetical protein, at 236,432 to 236,896
_RS43785
QEN71_RS43790: QEN71_RS43790 - hypothetical protein, at 236,893 to 237,285
_RS43790
QEN71_RS43795: QEN71_RS43795 - hypothetical protein, at 237,368 to 237,829
_RS43795
QEN71_RS43800: QEN71_RS43800 - hypothetical protein, at 237,861 to 238,184
_RS43800
QEN71_RS43805: QEN71_RS43805 - hypothetical protein, at 238,317 to 238,601
_RS43805
Position (kb) 237
238
239 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 236.869 kb on - strand at 236.869 kb on - strand at 236.869 kb on - strand at 236.960 kb on + strand, within QEN71_RS43790 at 236.961 kb on - strand, within QEN71_RS43790 at 236.996 kb on + strand, within QEN71_RS43790 at 236.996 kb on + strand, within QEN71_RS43790 at 236.996 kb on + strand, within QEN71_RS43790 at 236.996 kb on + strand, within QEN71_RS43790 at 236.997 kb on - strand, within QEN71_RS43790 at 236.997 kb on - strand, within QEN71_RS43790 at 236.997 kb on - strand, within QEN71_RS43790 at 236.997 kb on - strand, within QEN71_RS43790 at 237.024 kb on + strand, within QEN71_RS43790 at 237.025 kb on - strand, within QEN71_RS43790 at 237.099 kb on + strand, within QEN71_RS43790 at 237.099 kb on + strand, within QEN71_RS43790 at 237.099 kb on + strand, within QEN71_RS43790 at 237.100 kb on - strand, within QEN71_RS43790 at 237.100 kb on - strand, within QEN71_RS43790 at 237.100 kb on - strand, within QEN71_RS43790 at 237.100 kb on - strand, within QEN71_RS43790 at 237.100 kb on - strand, within QEN71_RS43790 at 237.106 kb on - strand, within QEN71_RS43790 at 237.106 kb on - strand, within QEN71_RS43790 at 237.264 kb on - strand at 237.264 kb on - strand at 237.408 kb on + strand at 237.409 kb on - strand at 237.576 kb on + strand, within QEN71_RS43795 at 237.576 kb on + strand, within QEN71_RS43795 at 237.747 kb on + strand, within QEN71_RS43795 at 237.747 kb on + strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.748 kb on - strand, within QEN71_RS43795 at 237.775 kb on + strand, within QEN71_RS43795 at 237.775 kb on + strand, within QEN71_RS43795 at 237.815 kb on - strand at 237.815 kb on - strand at 237.815 kb on - strand at 237.957 kb on + strand, within QEN71_RS43800 at 237.957 kb on + strand, within QEN71_RS43800 at 237.958 kb on - strand, within QEN71_RS43800 at 237.958 kb on - strand, within QEN71_RS43800 at 237.958 kb on - strand, within QEN71_RS43800 at 238.072 kb on + strand, within QEN71_RS43800 at 238.072 kb on + strand, within QEN71_RS43800 at 238.072 kb on + strand, within QEN71_RS43800 at 238.073 kb on - strand, within QEN71_RS43800 at 238.073 kb on - strand, within QEN71_RS43800 at 238.073 kb on - strand, within QEN71_RS43800 at 238.073 kb on - strand, within QEN71_RS43800 at 238.073 kb on - strand, within QEN71_RS43800 at 238.144 kb on + strand, within QEN71_RS43800 at 238.144 kb on + strand, within QEN71_RS43800 at 238.144 kb on + strand, within QEN71_RS43800 at 238.144 kb on + strand, within QEN71_RS43800 at 238.144 kb on + strand, within QEN71_RS43800 at 238.144 kb on + strand, within QEN71_RS43800 at 238.145 kb on - strand, within QEN71_RS43800 at 238.145 kb on - strand, within QEN71_RS43800 at 238.145 kb on - strand, within QEN71_RS43800 at 238.145 kb on - strand, within QEN71_RS43800 at 238.145 kb on - strand, within QEN71_RS43800 at 238.145 kb on - strand, within QEN71_RS43800 at 238.339 kb on + strand at 238.340 kb on - strand at 238.340 kb on - strand at 238.340 kb on - strand at 238.438 kb on + strand, within QEN71_RS43805 at 238.438 kb on + strand, within QEN71_RS43805 at 238.438 kb on + strand, within QEN71_RS43805 at 238.438 kb on + strand, within QEN71_RS43805 at 238.439 kb on - strand, within QEN71_RS43805 at 238.439 kb on - strand, within QEN71_RS43805 at 238.586 kb on + strand at 238.586 kb on + strand at 238.587 kb on - strand at 238.657 kb on + strand at 238.657 kb on + strand at 238.657 kb on + strand at 238.657 kb on + strand at 238.657 kb on + strand at 238.658 kb on - strand at 238.658 kb on - strand at 238.658 kb on - strand at 238.658 kb on - strand at 238.658 kb on - strand at 238.722 kb on - strand at 238.722 kb on - strand at 238.722 kb on - strand at 238.759 kb on + strand at 238.772 kb on + strand at 238.772 kb on + strand at 238.772 kb on + strand at 238.772 kb on + strand at 238.772 kb on + strand at 238.772 kb on + strand at 238.773 kb on - strand at 238.773 kb on - strand at 238.773 kb on - strand at 238.773 kb on - strand at 238.837 kb on + strand at 238.837 kb on + strand at 238.861 kb on - strand at 238.872 kb on + strand at 238.873 kb on - strand at 238.873 kb on - strand at 238.980 kb on + strand at 238.980 kb on + strand at 238.980 kb on + strand at 238.980 kb on + strand at 238.980 kb on + strand at 238.980 kb on + strand at 238.980 kb on + strand at 238.981 kb on - strand at 238.981 kb on - strand at 238.981 kb on - strand at 239.027 kb on + strand at 239.027 kb on + strand at 239.027 kb on + strand at 239.028 kb on - strand at 239.028 kb on - strand at 239.028 kb on - strand at 239.028 kb on - strand at 239.028 kb on - strand at 239.034 kb on - strand at 239.034 kb on - strand at 239.049 kb on + strand at 239.050 kb on - strand at 239.050 kb on - strand at 239.050 kb on - strand at 239.095 kb on + strand at 239.105 kb on + strand at 239.106 kb on - strand at 239.126 kb on + strand at 239.127 kb on - strand at 239.127 kb on - strand at 239.127 kb on - strand at 239.127 kb on - strand at 239.140 kb on + strand at 239.160 kb on + strand at 239.161 kb on + strand at 239.161 kb on - strand at 239.161 kb on - strand at 239.161 kb on - strand at 239.177 kb on + strand at 239.177 kb on + strand at 239.178 kb on - strand at 239.178 kb on - strand at 239.182 kb on + strand at 239.182 kb on + strand at 239.182 kb on + strand at 239.182 kb on + strand at 239.182 kb on + strand at 239.182 kb on + strand at 239.182 kb on + strand at 239.183 kb on - strand at 239.183 kb on - strand at 239.183 kb on - strand at 239.183 kb on - strand at 239.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 236,869 - +0.5 236,869 - -1.7 236,869 - -0.4 236,960 + QEN71_RS43790 0.17 -0.7 236,961 - QEN71_RS43790 0.17 -0.8 236,996 + QEN71_RS43790 0.26 +2.0 236,996 + QEN71_RS43790 0.26 -1.3 236,996 + QEN71_RS43790 0.26 +0.8 236,996 + QEN71_RS43790 0.26 -0.2 236,997 - QEN71_RS43790 0.26 -0.7 236,997 - QEN71_RS43790 0.26 -0.3 236,997 - QEN71_RS43790 0.26 -0.4 236,997 - QEN71_RS43790 0.26 -0.1 237,024 + QEN71_RS43790 0.33 -0.6 237,025 - QEN71_RS43790 0.34 -2.3 237,099 + QEN71_RS43790 0.52 +0.9 237,099 + QEN71_RS43790 0.52 +0.4 237,099 + QEN71_RS43790 0.52 +0.0 237,100 - QEN71_RS43790 0.53 +0.9 237,100 - QEN71_RS43790 0.53 +2.2 237,100 - QEN71_RS43790 0.53 +1.1 237,100 - QEN71_RS43790 0.53 +0.3 237,100 - QEN71_RS43790 0.53 -1.4 237,106 - QEN71_RS43790 0.54 -0.2 237,106 - QEN71_RS43790 0.54 +0.8 237,264 - +0.1 237,264 - -0.0 237,408 + +0.6 237,409 - -0.9 237,576 + QEN71_RS43795 0.45 -0.6 237,576 + QEN71_RS43795 0.45 -2.4 237,747 + QEN71_RS43795 0.82 +0.0 237,747 + QEN71_RS43795 0.82 +0.2 237,748 - QEN71_RS43795 0.82 +2.9 237,748 - QEN71_RS43795 0.82 -0.7 237,748 - QEN71_RS43795 0.82 -0.6 237,748 - QEN71_RS43795 0.82 -0.0 237,748 - QEN71_RS43795 0.82 +0.5 237,748 - QEN71_RS43795 0.82 -1.7 237,775 + QEN71_RS43795 0.88 +0.5 237,775 + QEN71_RS43795 0.88 +0.3 237,815 - +0.1 237,815 - +0.1 237,815 - -1.1 237,957 + QEN71_RS43800 0.30 -1.3 237,957 + QEN71_RS43800 0.30 -0.8 237,958 - QEN71_RS43800 0.30 +0.9 237,958 - QEN71_RS43800 0.30 -0.6 237,958 - QEN71_RS43800 0.30 -1.7 238,072 + QEN71_RS43800 0.65 -2.0 238,072 + QEN71_RS43800 0.65 -0.7 238,072 + QEN71_RS43800 0.65 -0.9 238,073 - QEN71_RS43800 0.65 -0.5 238,073 - QEN71_RS43800 0.65 -0.2 238,073 - QEN71_RS43800 0.65 +0.8 238,073 - QEN71_RS43800 0.65 -1.9 238,073 - QEN71_RS43800 0.65 -0.7 238,144 + QEN71_RS43800 0.87 +0.5 238,144 + QEN71_RS43800 0.87 -0.9 238,144 + QEN71_RS43800 0.87 -0.5 238,144 + QEN71_RS43800 0.87 +0.8 238,144 + QEN71_RS43800 0.87 -0.9 238,144 + QEN71_RS43800 0.87 -0.1 238,145 - QEN71_RS43800 0.88 +1.3 238,145 - QEN71_RS43800 0.88 +1.1 238,145 - QEN71_RS43800 0.88 -0.6 238,145 - QEN71_RS43800 0.88 +0.1 238,145 - QEN71_RS43800 0.88 -0.3 238,145 - QEN71_RS43800 0.88 -0.7 238,339 + -1.2 238,340 - -0.3 238,340 - -0.8 238,340 - +0.1 238,438 + QEN71_RS43805 0.42 +0.5 238,438 + QEN71_RS43805 0.42 -1.0 238,438 + QEN71_RS43805 0.42 +0.4 238,438 + QEN71_RS43805 0.42 -0.3 238,439 - QEN71_RS43805 0.43 +0.2 238,439 - QEN71_RS43805 0.43 +1.1 238,586 + -0.4 238,586 + +0.3 238,587 - -0.5 238,657 + -0.9 238,657 + +0.9 238,657 + +0.1 238,657 + -0.6 238,657 + +0.0 238,658 - +1.1 238,658 - +0.7 238,658 - -0.4 238,658 - -0.5 238,658 - -0.8 238,722 - -1.7 238,722 - -1.0 238,722 - +0.2 238,759 + -0.7 238,772 + -0.6 238,772 + -0.6 238,772 + -1.7 238,772 + +0.6 238,772 + -0.8 238,772 + -0.1 238,773 - +0.5 238,773 - -0.9 238,773 - -1.7 238,773 - -0.3 238,837 + -0.2 238,837 + +0.5 238,861 - -1.1 238,872 + +1.1 238,873 - +0.5 238,873 - -0.8 238,980 + +0.3 238,980 + -0.3 238,980 + +1.1 238,980 + +0.3 238,980 + -1.5 238,980 + -0.3 238,980 + -0.3 238,981 - -0.9 238,981 - -0.2 238,981 - +0.8 239,027 + -0.4 239,027 + -0.9 239,027 + -0.5 239,028 - -0.7 239,028 - +0.1 239,028 - -0.1 239,028 - +0.3 239,028 - +4.8 239,034 - +0.9 239,034 - -0.7 239,049 + -0.5 239,050 - +0.4 239,050 - +1.5 239,050 - -0.3 239,095 + +1.8 239,105 + -0.6 239,106 - +1.0 239,126 + -0.6 239,127 - +0.7 239,127 - +0.5 239,127 - -0.4 239,127 - -0.2 239,140 + +1.5 239,160 + +0.1 239,161 + -0.9 239,161 - +0.3 239,161 - +0.5 239,161 - +0.1 239,177 + -0.9 239,177 + -0.1 239,178 - +0.7 239,178 - +1.3 239,182 + +0.1 239,182 + +1.7 239,182 + -1.6 239,182 + -0.1 239,182 + -0.1 239,182 + +0.7 239,182 + -0.2 239,183 - +0.5 239,183 - +0.4 239,183 - -0.6 239,183 - -1.0 239,183 - -0.5
Or see this region's nucleotide sequence