Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS43530 and QEN71_RS43535 are separated by 17 nucleotides QEN71_RS43535 and QEN71_RS43540 are separated by 29 nucleotides QEN71_RS43540 and QEN71_RS43545 are separated by 442 nucleotides QEN71_RS43545 and QEN71_RS43550 overlap by 7 nucleotides
QEN71_RS43530: QEN71_RS43530 - hypothetical protein, at 189,050 to 189,277
_RS43530
QEN71_RS43535: QEN71_RS43535 - hypothetical protein, at 189,295 to 189,516
_RS43535
QEN71_RS43540: QEN71_RS43540 - hypothetical protein, at 189,546 to 189,884
_RS43540
QEN71_RS43545: QEN71_RS43545 - type II toxin-antitoxin system PemK/MazF family toxin, at 190,327 to 190,647
_RS43545
QEN71_RS43550: QEN71_RS43550 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 190,641 to 190,889
_RS43550
Position (kb) 189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 188.567 kb on + strand at 188.629 kb on + strand at 188.629 kb on + strand at 188.630 kb on - strand at 188.630 kb on - strand at 188.631 kb on + strand at 188.631 kb on + strand at 188.631 kb on + strand at 188.631 kb on + strand at 188.631 kb on + strand at 188.631 kb on + strand at 188.632 kb on - strand at 188.632 kb on - strand at 188.632 kb on - strand at 188.632 kb on - strand at 188.632 kb on - strand at 188.632 kb on - strand at 188.635 kb on + strand at 188.635 kb on + strand at 188.635 kb on + strand at 188.636 kb on - strand at 188.810 kb on + strand at 188.811 kb on - strand at 188.811 kb on - strand at 188.900 kb on + strand at 188.901 kb on - strand at 189.004 kb on + strand at 189.063 kb on + strand at 189.064 kb on - strand at 189.251 kb on + strand, within QEN71_RS43530 at 189.252 kb on - strand, within QEN71_RS43530 at 189.261 kb on + strand at 189.387 kb on + strand, within QEN71_RS43535 at 189.446 kb on + strand, within QEN71_RS43535 at 189.446 kb on + strand, within QEN71_RS43535 at 189.446 kb on + strand, within QEN71_RS43535 at 189.446 kb on + strand, within QEN71_RS43535 at 189.446 kb on + strand, within QEN71_RS43535 at 189.447 kb on - strand, within QEN71_RS43535 at 189.447 kb on - strand, within QEN71_RS43535 at 189.496 kb on + strand at 189.497 kb on - strand at 189.516 kb on + strand at 189.516 kb on + strand at 189.516 kb on + strand at 189.517 kb on - strand at 189.517 kb on - strand at 189.517 kb on - strand at 189.532 kb on - strand at 189.534 kb on + strand at 189.548 kb on - strand at 189.692 kb on - strand, within QEN71_RS43540 at 189.692 kb on - strand, within QEN71_RS43540 at 189.692 kb on - strand, within QEN71_RS43540 at 189.760 kb on + strand, within QEN71_RS43540 at 189.760 kb on + strand, within QEN71_RS43540 at 189.760 kb on + strand, within QEN71_RS43540 at 189.761 kb on - strand, within QEN71_RS43540 at 189.761 kb on - strand, within QEN71_RS43540 at 189.761 kb on - strand, within QEN71_RS43540 at 189.761 kb on - strand, within QEN71_RS43540 at 189.761 kb on - strand, within QEN71_RS43540 at 190.093 kb on + strand at 190.094 kb on - strand at 190.185 kb on - strand at 190.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 188,567 + +1.4 188,629 + -0.6 188,629 + -0.3 188,630 - +0.4 188,630 - -1.7 188,631 + -0.1 188,631 + -2.1 188,631 + +0.6 188,631 + -1.0 188,631 + +2.6 188,631 + -0.3 188,632 - -0.6 188,632 - -0.7 188,632 - +1.1 188,632 - +0.1 188,632 - +0.4 188,632 - -0.2 188,635 + -0.3 188,635 + +0.8 188,635 + -0.5 188,636 - -0.7 188,810 + -1.4 188,811 - -0.8 188,811 - -0.1 188,900 + +0.4 188,901 - +0.1 189,004 + -0.4 189,063 + +0.3 189,064 - +0.2 189,251 + QEN71_RS43530 0.88 +0.5 189,252 - QEN71_RS43530 0.89 -0.0 189,261 + -0.4 189,387 + QEN71_RS43535 0.41 -0.8 189,446 + QEN71_RS43535 0.68 -0.5 189,446 + QEN71_RS43535 0.68 -0.1 189,446 + QEN71_RS43535 0.68 +1.0 189,446 + QEN71_RS43535 0.68 -0.0 189,446 + QEN71_RS43535 0.68 -0.1 189,447 - QEN71_RS43535 0.68 -0.7 189,447 - QEN71_RS43535 0.68 +0.7 189,496 + -1.5 189,497 - -0.5 189,516 + +0.1 189,516 + +0.3 189,516 + -0.1 189,517 - -0.6 189,517 - -1.2 189,517 - +0.1 189,532 - +0.1 189,534 + +0.6 189,548 - -0.9 189,692 - QEN71_RS43540 0.43 -1.6 189,692 - QEN71_RS43540 0.43 -0.2 189,692 - QEN71_RS43540 0.43 +0.3 189,760 + QEN71_RS43540 0.63 -0.2 189,760 + QEN71_RS43540 0.63 +1.2 189,760 + QEN71_RS43540 0.63 +1.6 189,761 - QEN71_RS43540 0.63 +0.0 189,761 - QEN71_RS43540 0.63 -0.0 189,761 - QEN71_RS43540 0.63 -1.8 189,761 - QEN71_RS43540 0.63 -2.2 189,761 - QEN71_RS43540 0.63 -1.6 190,093 + -1.1 190,094 - -0.6 190,185 - -3.0 190,185 - -1.4
Or see this region's nucleotide sequence