Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41755 and QEN71_RS41760 are separated by 93 nucleotides QEN71_RS41760 and QEN71_RS41765 are separated by 77 nucleotides QEN71_RS41765 and QEN71_RS41770 are separated by 559 nucleotides
QEN71_RS41755: QEN71_RS41755 - hypothetical protein, at 430,602 to 431,087
_RS41755
QEN71_RS41760: QEN71_RS41760 - hypothetical protein, at 431,181 to 431,510
_RS41760
QEN71_RS41765: QEN71_RS41765 - hypothetical protein, at 431,588 to 431,977
_RS41765
QEN71_RS41770: QEN71_RS41770 - AAA family ATPase, at 432,537 to 433,967
_RS41770
Position (kb) 431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 430.591 kb on + strand at 430.616 kb on + strand at 430.616 kb on + strand at 430.616 kb on + strand at 430.629 kb on - strand at 430.973 kb on + strand, within QEN71_RS41755 at 430.974 kb on - strand, within QEN71_RS41755 at 430.997 kb on + strand, within QEN71_RS41755 at 430.997 kb on + strand, within QEN71_RS41755 at 430.997 kb on + strand, within QEN71_RS41755 at 430.997 kb on + strand, within QEN71_RS41755 at 430.998 kb on - strand, within QEN71_RS41755 at 430.998 kb on - strand, within QEN71_RS41755 at 430.998 kb on - strand, within QEN71_RS41755 at 430.998 kb on - strand, within QEN71_RS41755 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.215 kb on + strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.216 kb on - strand, within QEN71_RS41760 at 431.269 kb on + strand, within QEN71_RS41760 at 431.269 kb on + strand, within QEN71_RS41760 at 431.269 kb on + strand, within QEN71_RS41760 at 431.270 kb on - strand, within QEN71_RS41760 at 431.270 kb on - strand, within QEN71_RS41760 at 431.270 kb on - strand, within QEN71_RS41760 at 431.270 kb on - strand, within QEN71_RS41760 at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.478 kb on + strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.479 kb on - strand at 431.609 kb on + strand at 431.678 kb on + strand, within QEN71_RS41765 at 431.678 kb on + strand, within QEN71_RS41765 at 431.678 kb on + strand, within QEN71_RS41765 at 431.678 kb on + strand, within QEN71_RS41765 at 431.678 kb on + strand, within QEN71_RS41765 at 431.678 kb on + strand, within QEN71_RS41765 at 431.678 kb on + strand, within QEN71_RS41765 at 431.678 kb on + strand, within QEN71_RS41765 at 431.679 kb on - strand, within QEN71_RS41765 at 431.679 kb on - strand, within QEN71_RS41765 at 431.679 kb on - strand, within QEN71_RS41765 at 431.679 kb on - strand, within QEN71_RS41765 at 431.679 kb on - strand, within QEN71_RS41765 at 431.679 kb on - strand, within QEN71_RS41765 at 431.679 kb on - strand, within QEN71_RS41765 at 431.900 kb on + strand, within QEN71_RS41765 at 431.975 kb on + strand at 432.020 kb on + strand at 432.161 kb on + strand at 432.162 kb on - strand at 432.162 kb on - strand at 432.190 kb on + strand at 432.190 kb on + strand at 432.191 kb on - strand at 432.191 kb on - strand at 432.314 kb on + strand at 432.314 kb on + strand at 432.315 kb on - strand at 432.336 kb on + strand at 432.337 kb on - strand at 432.337 kb on - strand at 432.378 kb on + strand at 432.378 kb on + strand at 432.378 kb on + strand at 432.379 kb on - strand at 432.379 kb on - strand at 432.379 kb on - strand at 432.410 kb on - strand at 432.418 kb on + strand at 432.418 kb on + strand at 432.419 kb on - strand at 432.419 kb on - strand at 432.439 kb on - strand at 432.439 kb on - strand at 432.472 kb on - strand at 432.472 kb on - strand at 432.472 kb on - strand at 432.489 kb on + strand at 432.508 kb on - strand at 432.545 kb on - strand at 432.550 kb on + strand at 432.585 kb on + strand at 432.590 kb on + strand at 432.590 kb on + strand at 432.620 kb on + strand at 432.621 kb on - strand at 432.635 kb on - strand at 432.647 kb on + strand at 432.672 kb on + strand at 432.672 kb on + strand at 432.673 kb on - strand at 432.733 kb on + strand, within QEN71_RS41770 at 432.734 kb on - strand, within QEN71_RS41770 at 432.734 kb on - strand, within QEN71_RS41770 at 432.800 kb on + strand, within QEN71_RS41770 at 432.800 kb on + strand, within QEN71_RS41770 at 432.800 kb on + strand, within QEN71_RS41770 at 432.801 kb on - strand, within QEN71_RS41770 at 432.801 kb on - strand, within QEN71_RS41770 at 432.804 kb on + strand, within QEN71_RS41770 at 432.829 kb on + strand, within QEN71_RS41770 at 432.829 kb on + strand, within QEN71_RS41770 at 432.829 kb on + strand, within QEN71_RS41770 at 432.829 kb on + strand, within QEN71_RS41770 at 432.839 kb on + strand, within QEN71_RS41770 at 432.840 kb on - strand, within QEN71_RS41770 at 432.863 kb on + strand, within QEN71_RS41770 at 432.863 kb on + strand, within QEN71_RS41770 at 432.863 kb on + strand, within QEN71_RS41770 at 432.863 kb on + strand, within QEN71_RS41770 at 432.863 kb on + strand, within QEN71_RS41770 at 432.863 kb on + strand, within QEN71_RS41770 at 432.864 kb on - strand, within QEN71_RS41770 at 432.864 kb on - strand, within QEN71_RS41770 at 432.895 kb on + strand, within QEN71_RS41770 at 432.895 kb on + strand, within QEN71_RS41770 at 432.938 kb on - strand, within QEN71_RS41770 at 432.956 kb on + strand, within QEN71_RS41770 at 432.957 kb on - strand, within QEN71_RS41770 at 432.969 kb on + strand, within QEN71_RS41770 at 432.970 kb on - strand, within QEN71_RS41770 at 432.970 kb on - strand, within QEN71_RS41770 at 432.970 kb on - strand, within QEN71_RS41770 at 432.970 kb on - strand, within QEN71_RS41770
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 430,591 + +0.6 430,616 + -0.4 430,616 + -1.6 430,616 + +0.2 430,629 - -1.0 430,973 + QEN71_RS41755 0.76 +0.5 430,974 - QEN71_RS41755 0.77 -1.2 430,997 + QEN71_RS41755 0.81 -1.2 430,997 + QEN71_RS41755 0.81 -1.5 430,997 + QEN71_RS41755 0.81 +0.3 430,997 + QEN71_RS41755 0.81 -2.3 430,998 - QEN71_RS41755 0.81 +0.8 430,998 - QEN71_RS41755 0.81 -0.2 430,998 - QEN71_RS41755 0.81 +0.4 430,998 - QEN71_RS41755 0.81 -2.8 431,215 + QEN71_RS41760 0.10 -0.4 431,215 + QEN71_RS41760 0.10 -1.1 431,215 + QEN71_RS41760 0.10 +0.8 431,215 + QEN71_RS41760 0.10 -1.1 431,215 + QEN71_RS41760 0.10 +0.1 431,215 + QEN71_RS41760 0.10 -0.3 431,215 + QEN71_RS41760 0.10 +1.0 431,215 + QEN71_RS41760 0.10 -0.5 431,215 + QEN71_RS41760 0.10 -0.0 431,215 + QEN71_RS41760 0.10 +3.6 431,215 + QEN71_RS41760 0.10 +0.4 431,215 + QEN71_RS41760 0.10 -0.2 431,215 + QEN71_RS41760 0.10 -1.8 431,216 - QEN71_RS41760 0.11 -0.4 431,216 - QEN71_RS41760 0.11 -1.3 431,216 - QEN71_RS41760 0.11 -0.4 431,216 - QEN71_RS41760 0.11 -2.1 431,216 - QEN71_RS41760 0.11 -0.1 431,216 - QEN71_RS41760 0.11 -1.3 431,216 - QEN71_RS41760 0.11 -0.8 431,216 - QEN71_RS41760 0.11 -2.5 431,216 - QEN71_RS41760 0.11 +0.4 431,216 - QEN71_RS41760 0.11 +1.2 431,216 - QEN71_RS41760 0.11 +0.4 431,216 - QEN71_RS41760 0.11 -0.1 431,216 - QEN71_RS41760 0.11 -1.9 431,216 - QEN71_RS41760 0.11 +0.4 431,216 - QEN71_RS41760 0.11 +0.1 431,216 - QEN71_RS41760 0.11 +0.1 431,269 + QEN71_RS41760 0.27 -0.7 431,269 + QEN71_RS41760 0.27 -1.2 431,269 + QEN71_RS41760 0.27 +0.1 431,270 - QEN71_RS41760 0.27 +0.1 431,270 - QEN71_RS41760 0.27 +1.1 431,270 - QEN71_RS41760 0.27 +1.1 431,270 - QEN71_RS41760 0.27 +2.0 431,478 + -0.2 431,478 + +2.6 431,478 + -1.6 431,478 + -2.1 431,478 + +1.5 431,478 + -1.9 431,478 + +1.7 431,478 + -0.1 431,478 + -0.1 431,478 + +1.6 431,478 + +0.6 431,478 + -0.2 431,478 + +0.4 431,478 + -1.7 431,478 + -1.6 431,479 - +1.2 431,479 - -0.0 431,479 - -0.3 431,479 - +0.9 431,479 - +0.1 431,479 - +1.4 431,479 - -0.4 431,479 - -0.9 431,479 - +0.3 431,479 - +0.3 431,479 - -0.2 431,479 - +0.7 431,479 - +1.1 431,479 - +0.2 431,479 - -0.7 431,479 - +1.1 431,479 - +1.0 431,479 - +0.6 431,479 - +1.9 431,479 - -0.1 431,479 - -0.6 431,479 - +0.2 431,479 - +2.1 431,479 - -1.9 431,479 - +0.1 431,479 - -0.8 431,609 + +0.1 431,678 + QEN71_RS41765 0.23 +0.4 431,678 + QEN71_RS41765 0.23 -0.2 431,678 + QEN71_RS41765 0.23 -0.2 431,678 + QEN71_RS41765 0.23 -0.5 431,678 + QEN71_RS41765 0.23 -2.4 431,678 + QEN71_RS41765 0.23 -1.7 431,678 + QEN71_RS41765 0.23 -0.4 431,678 + QEN71_RS41765 0.23 +1.4 431,679 - QEN71_RS41765 0.23 -0.7 431,679 - QEN71_RS41765 0.23 -1.2 431,679 - QEN71_RS41765 0.23 +0.0 431,679 - QEN71_RS41765 0.23 +0.4 431,679 - QEN71_RS41765 0.23 -1.0 431,679 - QEN71_RS41765 0.23 +0.1 431,679 - QEN71_RS41765 0.23 -0.1 431,900 + QEN71_RS41765 0.80 +1.7 431,975 + -0.9 432,020 + -0.5 432,161 + +1.2 432,162 - +0.5 432,162 - -1.2 432,190 + -2.3 432,190 + -1.3 432,191 - +0.0 432,191 - -1.4 432,314 + -0.9 432,314 + +0.9 432,315 - +0.8 432,336 + -0.9 432,337 - +0.8 432,337 - -0.1 432,378 + -3.4 432,378 + +0.5 432,378 + -0.8 432,379 - +1.1 432,379 - +0.1 432,379 - +1.5 432,410 - +0.1 432,418 + -0.6 432,418 + -0.9 432,419 - +1.4 432,419 - -1.4 432,439 - +0.6 432,439 - -2.3 432,472 - +0.0 432,472 - +0.4 432,472 - +1.1 432,489 + -0.6 432,508 - -0.8 432,545 - +0.1 432,550 + -0.5 432,585 + +0.4 432,590 + +0.5 432,590 + -1.9 432,620 + +0.6 432,621 - +0.0 432,635 - -0.3 432,647 + -1.6 432,672 + -1.4 432,672 + +0.6 432,673 - -0.0 432,733 + QEN71_RS41770 0.14 -1.0 432,734 - QEN71_RS41770 0.14 +1.1 432,734 - QEN71_RS41770 0.14 +0.9 432,800 + QEN71_RS41770 0.18 +0.2 432,800 + QEN71_RS41770 0.18 -0.2 432,800 + QEN71_RS41770 0.18 -1.5 432,801 - QEN71_RS41770 0.18 -2.2 432,801 - QEN71_RS41770 0.18 -1.1 432,804 + QEN71_RS41770 0.19 +0.6 432,829 + QEN71_RS41770 0.20 +0.2 432,829 + QEN71_RS41770 0.20 -0.1 432,829 + QEN71_RS41770 0.20 -0.6 432,829 + QEN71_RS41770 0.20 -1.4 432,839 + QEN71_RS41770 0.21 +0.5 432,840 - QEN71_RS41770 0.21 -0.1 432,863 + QEN71_RS41770 0.23 -0.6 432,863 + QEN71_RS41770 0.23 -1.7 432,863 + QEN71_RS41770 0.23 +1.8 432,863 + QEN71_RS41770 0.23 -1.0 432,863 + QEN71_RS41770 0.23 +0.9 432,863 + QEN71_RS41770 0.23 -0.2 432,864 - QEN71_RS41770 0.23 +1.4 432,864 - QEN71_RS41770 0.23 -0.2 432,895 + QEN71_RS41770 0.25 +0.9 432,895 + QEN71_RS41770 0.25 -1.4 432,938 - QEN71_RS41770 0.28 +0.7 432,956 + QEN71_RS41770 0.29 +0.1 432,957 - QEN71_RS41770 0.29 +0.7 432,969 + QEN71_RS41770 0.30 +2.8 432,970 - QEN71_RS41770 0.30 +0.1 432,970 - QEN71_RS41770 0.30 -1.1 432,970 - QEN71_RS41770 0.30 -0.9 432,970 - QEN71_RS41770 0.30 +0.1
Or see this region's nucleotide sequence