Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39985

Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39980 and QEN71_RS39985 overlap by 24 nucleotidesQEN71_RS39985 and QEN71_RS39990 are separated by 560 nucleotides QEN71_RS39980: QEN71_RS39980 - ATP-binding cassette domain-containing protein, at 50,890 to 52,029 _RS39980 QEN71_RS39985: QEN71_RS39985 - metalloprotease TldD, at 52,006 to 52,312 _RS39985 QEN71_RS39990: QEN71_RS39990 - hypothetical protein, at 52,873 to 53,430 _RS39990 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1 2 3at 51.021 kb on + strand, within QEN71_RS39980at 51.021 kb on + strand, within QEN71_RS39980at 51.022 kb on - strand, within QEN71_RS39980at 51.167 kb on - strand, within QEN71_RS39980at 51.198 kb on + strand, within QEN71_RS39980at 51.199 kb on - strand, within QEN71_RS39980at 51.199 kb on - strand, within QEN71_RS39980at 51.205 kb on + strand, within QEN71_RS39980at 51.206 kb on - strand, within QEN71_RS39980at 51.212 kb on + strand, within QEN71_RS39980at 51.212 kb on + strand, within QEN71_RS39980at 51.213 kb on - strand, within QEN71_RS39980at 51.213 kb on - strand, within QEN71_RS39980at 51.213 kb on - strand, within QEN71_RS39980at 51.259 kb on - strand, within QEN71_RS39980at 51.259 kb on - strand, within QEN71_RS39980at 51.337 kb on - strand, within QEN71_RS39980at 51.417 kb on + strand, within QEN71_RS39980at 51.417 kb on + strand, within QEN71_RS39980at 51.417 kb on + strand, within QEN71_RS39980at 51.418 kb on - strand, within QEN71_RS39980at 51.418 kb on - strand, within QEN71_RS39980at 51.653 kb on + strand, within QEN71_RS39980at 51.654 kb on - strand, within QEN71_RS39980at 51.654 kb on - strand, within QEN71_RS39980at 51.682 kb on + strand, within QEN71_RS39980at 51.682 kb on + strand, within QEN71_RS39980at 51.683 kb on - strand, within QEN71_RS39980at 51.845 kb on - strand, within QEN71_RS39980at 51.845 kb on - strand, within QEN71_RS39980at 51.845 kb on - strand, within QEN71_RS39980at 51.845 kb on - strand, within QEN71_RS39980at 51.907 kb on - strand, within QEN71_RS39980at 51.907 kb on - strand, within QEN71_RS39980at 51.918 kb on - strandat 51.930 kb on + strandat 51.930 kb on + strandat 51.931 kb on - strandat 51.931 kb on - strandat 51.931 kb on - strandat 52.259 kb on + strand, within QEN71_RS39985at 52.259 kb on + strand, within QEN71_RS39985at 52.259 kb on + strand, within QEN71_RS39985at 52.259 kb on + strand, within QEN71_RS39985at 52.259 kb on + strand, within QEN71_RS39985at 52.259 kb on + strand, within QEN71_RS39985at 52.260 kb on - strand, within QEN71_RS39985at 52.260 kb on - strand, within QEN71_RS39985at 52.260 kb on - strand, within QEN71_RS39985at 52.260 kb on - strand, within QEN71_RS39985at 52.297 kb on - strandat 52.400 kb on - strandat 52.426 kb on + strandat 52.426 kb on + strandat 52.426 kb on + strandat 52.427 kb on - strandat 52.442 kb on + strandat 52.443 kb on - strandat 52.481 kb on + strandat 52.481 kb on + strandat 52.481 kb on + strandat 52.482 kb on - strandat 52.482 kb on - strandat 52.482 kb on - strandat 52.482 kb on - strandat 52.482 kb on - strandat 52.517 kb on + strandat 52.517 kb on + strandat 52.530 kb on + strandat 52.530 kb on + strandat 52.531 kb on - strandat 52.531 kb on - strandat 52.553 kb on + strandat 52.553 kb on + strandat 52.632 kb on + strandat 52.632 kb on + strandat 52.632 kb on + strandat 52.632 kb on + strandat 52.730 kb on + strandat 52.730 kb on + strandat 52.730 kb on + strandat 52.839 kb on + strandat 52.840 kb on - strandat 52.840 kb on - strandat 52.840 kb on - strandat 52.855 kb on + strandat 52.855 kb on + strandat 52.856 kb on - strandat 52.856 kb on - strandat 52.856 kb on - strandat 53.002 kb on - strand, within QEN71_RS39990at 53.002 kb on - strand, within QEN71_RS39990at 53.075 kb on + strand, within QEN71_RS39990at 53.259 kb on + strand, within QEN71_RS39990

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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51,021 + QEN71_RS39980 0.11 -0.6
51,021 + QEN71_RS39980 0.11 -1.9
51,022 - QEN71_RS39980 0.12 +0.4
51,167 - QEN71_RS39980 0.24 -0.1
51,198 + QEN71_RS39980 0.27 -1.4
51,199 - QEN71_RS39980 0.27 +1.1
51,199 - QEN71_RS39980 0.27 -1.4
51,205 + QEN71_RS39980 0.28 -0.2
51,206 - QEN71_RS39980 0.28 -0.6
51,212 + QEN71_RS39980 0.28 -1.0
51,212 + QEN71_RS39980 0.28 -2.5
51,213 - QEN71_RS39980 0.28 +0.8
51,213 - QEN71_RS39980 0.28 +0.1
51,213 - QEN71_RS39980 0.28 -0.2
51,259 - QEN71_RS39980 0.32 -0.8
51,259 - QEN71_RS39980 0.32 -0.2
51,337 - QEN71_RS39980 0.39 +1.4
51,417 + QEN71_RS39980 0.46 +1.6
51,417 + QEN71_RS39980 0.46 +0.4
51,417 + QEN71_RS39980 0.46 -0.5
51,418 - QEN71_RS39980 0.46 +0.8
51,418 - QEN71_RS39980 0.46 -1.7
51,653 + QEN71_RS39980 0.67 +3.0
51,654 - QEN71_RS39980 0.67 -1.3
51,654 - QEN71_RS39980 0.67 -0.8
51,682 + QEN71_RS39980 0.69 -0.4
51,682 + QEN71_RS39980 0.69 +0.3
51,683 - QEN71_RS39980 0.70 -0.2
51,845 - QEN71_RS39980 0.84 -0.8
51,845 - QEN71_RS39980 0.84 -1.2
51,845 - QEN71_RS39980 0.84 -0.1
51,845 - QEN71_RS39980 0.84 +0.1
51,907 - QEN71_RS39980 0.89 -0.4
51,907 - QEN71_RS39980 0.89 +0.7
51,918 - -1.4
51,930 + -1.1
51,930 + +0.4
51,931 - -1.4
51,931 - +0.4
51,931 - -2.1
52,259 + QEN71_RS39985 0.82 +0.3
52,259 + QEN71_RS39985 0.82 -1.8
52,259 + QEN71_RS39985 0.82 -0.2
52,259 + QEN71_RS39985 0.82 +1.1
52,259 + QEN71_RS39985 0.82 -1.3
52,259 + QEN71_RS39985 0.82 -0.4
52,260 - QEN71_RS39985 0.83 -0.4
52,260 - QEN71_RS39985 0.83 -0.4
52,260 - QEN71_RS39985 0.83 +1.1
52,260 - QEN71_RS39985 0.83 -0.4
52,297 - -0.4
52,400 - -0.2
52,426 + +0.8
52,426 + -2.6
52,426 + -0.8
52,427 - -0.9
52,442 + -1.2
52,443 - -0.1
52,481 + +1.2
52,481 + -1.4
52,481 + +0.1
52,482 - +0.0
52,482 - -1.1
52,482 - -2.0
52,482 - -0.5
52,482 - -0.6
52,517 + +1.4
52,517 + +0.2
52,530 + +1.4
52,530 + +1.3
52,531 - -0.5
52,531 - -0.5
52,553 + +0.1
52,553 + +1.4
52,632 + -1.8
52,632 + -0.7
52,632 + +1.3
52,632 + -0.2
52,730 + +1.4
52,730 + -0.4
52,730 + +2.7
52,839 + +0.3
52,840 - +0.3
52,840 - +0.1
52,840 - -0.4
52,855 + -0.5
52,855 + -0.6
52,856 - -0.5
52,856 - -1.3
52,856 - +0.8
53,002 - QEN71_RS39990 0.23 +2.6
53,002 - QEN71_RS39990 0.23 -0.5
53,075 + QEN71_RS39990 0.36 +1.1
53,259 + QEN71_RS39990 0.69 -0.2

Or see this region's nucleotide sequence