Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39940 and QEN71_RS39945 are separated by 20 nucleotides QEN71_RS39945 and QEN71_RS39950 are separated by 496 nucleotides QEN71_RS39950 and QEN71_RS39955 are separated by 591 nucleotides QEN71_RS39955 and QEN71_RS39960 are separated by 45 nucleotides
QEN71_RS39940: QEN71_RS39940 - helix-turn-helix domain-containing protein, at 46,031 to 46,661
_RS39940
QEN71_RS39945: QEN71_RS39945 - IS5/IS1182 family transposase, at 46,682 to 46,855
_RS39945
QEN71_RS39950: QEN71_RS39950 - ectoine synthase, at 47,352 to 47,738
_RS39950
QEN71_RS39955: QEN71_RS39955 - transposase domain-containing protein, at 48,330 to 48,530
_RS39955
QEN71_RS39960: QEN71_RS39960 - transposase domain-containing protein, at 48,576 to 48,767
_RS39960
Position (kb) 47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 46.373 kb on + strand, within QEN71_RS39940 at 46.373 kb on + strand, within QEN71_RS39940 at 46.373 kb on + strand, within QEN71_RS39940 at 46.373 kb on + strand, within QEN71_RS39940 at 46.374 kb on - strand, within QEN71_RS39940 at 46.374 kb on - strand, within QEN71_RS39940 at 46.374 kb on - strand, within QEN71_RS39940 at 46.378 kb on + strand, within QEN71_RS39940 at 46.407 kb on + strand, within QEN71_RS39940 at 46.408 kb on - strand, within QEN71_RS39940 at 46.422 kb on + strand, within QEN71_RS39940 at 46.565 kb on + strand, within QEN71_RS39940 at 46.566 kb on - strand, within QEN71_RS39940 at 46.634 kb on - strand at 46.650 kb on - strand at 46.650 kb on - strand at 46.682 kb on + strand at 46.683 kb on - strand at 46.683 kb on - strand at 46.758 kb on + strand, within QEN71_RS39945 at 46.758 kb on + strand, within QEN71_RS39945 at 46.759 kb on - strand, within QEN71_RS39945 at 46.887 kb on - strand at 46.887 kb on - strand at 46.903 kb on + strand at 47.038 kb on + strand at 47.038 kb on + strand at 47.038 kb on + strand at 47.039 kb on - strand at 47.140 kb on + strand at 47.295 kb on - strand at 47.303 kb on - strand at 47.354 kb on - strand at 47.354 kb on - strand at 47.489 kb on - strand, within QEN71_RS39950 at 47.489 kb on - strand, within QEN71_RS39950 at 47.489 kb on - strand, within QEN71_RS39950 at 47.489 kb on - strand, within QEN71_RS39950 at 47.489 kb on - strand, within QEN71_RS39950 at 47.489 kb on - strand, within QEN71_RS39950 at 47.535 kb on + strand, within QEN71_RS39950 at 47.560 kb on + strand, within QEN71_RS39950 at 47.616 kb on + strand, within QEN71_RS39950 at 47.657 kb on + strand, within QEN71_RS39950 at 47.673 kb on - strand, within QEN71_RS39950 at 47.676 kb on - strand, within QEN71_RS39950 at 47.738 kb on + strand at 47.738 kb on + strand at 47.739 kb on - strand at 47.758 kb on - strand at 48.088 kb on + strand at 48.088 kb on + strand at 48.096 kb on + strand at 48.185 kb on - strand at 48.260 kb on + strand at 48.260 kb on + strand at 48.260 kb on + strand at 48.261 kb on - strand at 48.556 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 46,373 + QEN71_RS39940 0.54 -0.4 46,373 + QEN71_RS39940 0.54 -0.9 46,373 + QEN71_RS39940 0.54 -1.2 46,373 + QEN71_RS39940 0.54 -0.1 46,374 - QEN71_RS39940 0.54 +0.6 46,374 - QEN71_RS39940 0.54 -0.6 46,374 - QEN71_RS39940 0.54 +0.1 46,378 + QEN71_RS39940 0.55 +0.2 46,407 + QEN71_RS39940 0.60 -0.3 46,408 - QEN71_RS39940 0.60 -0.0 46,422 + QEN71_RS39940 0.62 -0.3 46,565 + QEN71_RS39940 0.85 -1.2 46,566 - QEN71_RS39940 0.85 +0.1 46,634 - +0.8 46,650 - -0.1 46,650 - +0.1 46,682 + -3.0 46,683 - -0.9 46,683 - +2.3 46,758 + QEN71_RS39945 0.44 -1.4 46,758 + QEN71_RS39945 0.44 +0.3 46,759 - QEN71_RS39945 0.44 +0.4 46,887 - -0.7 46,887 - -0.2 46,903 + -2.1 47,038 + -0.1 47,038 + +0.2 47,038 + +0.4 47,039 - -0.4 47,140 + -2.1 47,295 - -0.6 47,303 - -1.7 47,354 - -1.0 47,354 - -2.5 47,489 - QEN71_RS39950 0.35 -2.8 47,489 - QEN71_RS39950 0.35 -0.6 47,489 - QEN71_RS39950 0.35 -1.0 47,489 - QEN71_RS39950 0.35 +0.1 47,489 - QEN71_RS39950 0.35 +0.4 47,489 - QEN71_RS39950 0.35 +1.2 47,535 + QEN71_RS39950 0.47 -1.7 47,560 + QEN71_RS39950 0.54 -0.2 47,616 + QEN71_RS39950 0.68 -1.9 47,657 + QEN71_RS39950 0.79 +1.6 47,673 - QEN71_RS39950 0.83 -1.4 47,676 - QEN71_RS39950 0.84 -2.3 47,738 + -0.5 47,738 + +0.1 47,739 - -1.6 47,758 - +0.0 48,088 + -0.5 48,088 + +0.3 48,096 + -2.8 48,185 - -0.9 48,260 + +0.5 48,260 + +0.3 48,260 + -1.3 48,261 - +2.7 48,556 - +1.8
Or see this region's nucleotide sequence