Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38020

Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38015 and QEN71_RS38020 overlap by 1 nucleotidesQEN71_RS38020 and QEN71_RS38025 are separated by 13 nucleotides QEN71_RS38015: QEN71_RS38015 - glycolate oxidase subunit GlcD, at 1,901,289 to 1,902,788 _RS38015 QEN71_RS38020: QEN71_RS38020 - glycolate oxidase subunit GlcE, at 1,902,788 to 1,903,855 _RS38020 QEN71_RS38025: QEN71_RS38025 - glycolate oxidase subunit GlcF, at 1,903,869 to 1,905,137 _RS38025 Position (kb) 1902 1903 1904Strain fitness (log2 ratio) -2 -1 0 1 2at 1901.999 kb on - strand, within QEN71_RS38015at 1902.019 kb on + strand, within QEN71_RS38015at 1902.093 kb on - strand, within QEN71_RS38015at 1902.339 kb on + strand, within QEN71_RS38015at 1902.342 kb on + strand, within QEN71_RS38015at 1902.962 kb on + strand, within QEN71_RS38020at 1902.962 kb on + strand, within QEN71_RS38020at 1903.235 kb on + strand, within QEN71_RS38020at 1903.418 kb on + strand, within QEN71_RS38020at 1903.981 kb on - strandat 1904.025 kb on + strand, within QEN71_RS38025at 1904.423 kb on + strand, within QEN71_RS38025at 1904.512 kb on - strand, within QEN71_RS38025at 1904.643 kb on + strand, within QEN71_RS38025at 1904.643 kb on + strand, within QEN71_RS38025at 1904.849 kb on - strand, within QEN71_RS38025

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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1,901,999 - QEN71_RS38015 0.47 +0.5
1,902,019 + QEN71_RS38015 0.49 -0.4
1,902,093 - QEN71_RS38015 0.54 +1.0
1,902,339 + QEN71_RS38015 0.70 -2.3
1,902,342 + QEN71_RS38015 0.70 -0.4
1,902,962 + QEN71_RS38020 0.16 -0.3
1,902,962 + QEN71_RS38020 0.16 +0.0
1,903,235 + QEN71_RS38020 0.42 +0.4
1,903,418 + QEN71_RS38020 0.59 -0.1
1,903,981 - -0.4
1,904,025 + QEN71_RS38025 0.12 +1.8
1,904,423 + QEN71_RS38025 0.44 +0.2
1,904,512 - QEN71_RS38025 0.51 +2.3
1,904,643 + QEN71_RS38025 0.61 +0.1
1,904,643 + QEN71_RS38025 0.61 +0.4
1,904,849 - QEN71_RS38025 0.77 -0.5

Or see this region's nucleotide sequence