Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS37555 and QEN71_RS37560 are separated by 45 nucleotides QEN71_RS37560 and QEN71_RS37565 are separated by 187 nucleotides QEN71_RS37565 and QEN71_RS37570 are separated by 271 nucleotides QEN71_RS37570 and QEN71_RS37575 are separated by 150 nucleotides
QEN71_RS37555: QEN71_RS37555 - response regulator, at 1,801,374 to 1,801,757
_RS37555
QEN71_RS37560: QEN71_RS37560 - H-NS family nucleoid-associated regulatory protein, at 1,801,803 to 1,802,360
_RS37560
QEN71_RS37565: QEN71_RS37565 - PilZ domain-containing protein, at 1,802,548 to 1,803,474
_RS37565
QEN71_RS37570: QEN71_RS37570 - VOC family protein, at 1,803,746 to 1,804,171
_RS37570
QEN71_RS37575: QEN71_RS37575 - LysR family transcriptional regulator, at 1,804,322 to 1,805,269
_RS37575
Position (kb) 1802
1803
1804 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1801.558 kb on + strand, within QEN71_RS37555 at 1801.559 kb on - strand, within QEN71_RS37555 at 1801.559 kb on - strand, within QEN71_RS37555 at 1801.559 kb on - strand, within QEN71_RS37555 at 1801.657 kb on + strand, within QEN71_RS37555 at 1801.657 kb on + strand, within QEN71_RS37555 at 1801.776 kb on + strand at 1801.776 kb on + strand at 1801.801 kb on + strand at 1801.802 kb on - strand at 1801.828 kb on - strand at 1801.835 kb on + strand at 1801.836 kb on - strand at 1801.855 kb on + strand at 1801.855 kb on + strand at 1801.855 kb on + strand at 1801.855 kb on + strand at 1801.855 kb on + strand at 1801.855 kb on + strand at 1801.855 kb on + strand at 1801.855 kb on + strand at 1801.855 kb on + strand at 1801.856 kb on - strand at 1801.856 kb on - strand at 1801.856 kb on - strand at 1801.856 kb on - strand at 1801.856 kb on - strand at 1801.856 kb on - strand at 1801.856 kb on - strand at 1801.856 kb on - strand at 1801.859 kb on + strand, within QEN71_RS37560 at 1801.859 kb on + strand, within QEN71_RS37560 at 1801.859 kb on + strand, within QEN71_RS37560 at 1801.859 kb on + strand, within QEN71_RS37560 at 1801.860 kb on - strand, within QEN71_RS37560 at 1801.863 kb on + strand, within QEN71_RS37560 at 1801.863 kb on + strand, within QEN71_RS37560 at 1801.863 kb on + strand, within QEN71_RS37560 at 1801.863 kb on + strand, within QEN71_RS37560 at 1801.864 kb on - strand, within QEN71_RS37560 at 1801.864 kb on - strand, within QEN71_RS37560 at 1801.864 kb on - strand, within QEN71_RS37560 at 1801.865 kb on + strand, within QEN71_RS37560 at 1801.866 kb on - strand, within QEN71_RS37560 at 1801.866 kb on - strand, within QEN71_RS37560 at 1801.866 kb on - strand, within QEN71_RS37560 at 1801.911 kb on + strand, within QEN71_RS37560 at 1802.007 kb on + strand, within QEN71_RS37560 at 1802.007 kb on + strand, within QEN71_RS37560 at 1802.007 kb on + strand, within QEN71_RS37560 at 1802.007 kb on + strand, within QEN71_RS37560 at 1802.008 kb on - strand, within QEN71_RS37560 at 1802.008 kb on - strand, within QEN71_RS37560 at 1802.008 kb on - strand, within QEN71_RS37560 at 1802.011 kb on + strand, within QEN71_RS37560 at 1802.011 kb on + strand, within QEN71_RS37560 at 1802.011 kb on + strand, within QEN71_RS37560 at 1802.011 kb on + strand, within QEN71_RS37560 at 1802.011 kb on + strand, within QEN71_RS37560 at 1802.011 kb on + strand, within QEN71_RS37560 at 1802.011 kb on + strand, within QEN71_RS37560 at 1802.011 kb on + strand, within QEN71_RS37560 at 1802.011 kb on + strand, within QEN71_RS37560 at 1802.012 kb on - strand, within QEN71_RS37560 at 1802.012 kb on - strand, within QEN71_RS37560 at 1802.012 kb on - strand, within QEN71_RS37560 at 1802.100 kb on + strand, within QEN71_RS37560 at 1802.100 kb on + strand, within QEN71_RS37560 at 1802.101 kb on - strand, within QEN71_RS37560 at 1802.101 kb on - strand, within QEN71_RS37560 at 1802.239 kb on + strand, within QEN71_RS37560 at 1802.239 kb on + strand, within QEN71_RS37560 at 1802.273 kb on + strand, within QEN71_RS37560 at 1802.398 kb on + strand at 1802.398 kb on + strand at 1802.399 kb on - strand at 1802.399 kb on - strand at 1802.399 kb on - strand at 1802.399 kb on - strand at 1802.412 kb on + strand at 1802.413 kb on - strand at 1802.438 kb on + strand at 1802.439 kb on - strand at 1802.439 kb on - strand at 1802.439 kb on - strand at 1802.526 kb on + strand at 1802.652 kb on + strand, within QEN71_RS37565 at 1802.653 kb on - strand, within QEN71_RS37565 at 1802.694 kb on + strand, within QEN71_RS37565 at 1802.695 kb on - strand, within QEN71_RS37565 at 1802.695 kb on - strand, within QEN71_RS37565 at 1802.960 kb on + strand, within QEN71_RS37565 at 1803.125 kb on + strand, within QEN71_RS37565 at 1803.411 kb on - strand at 1803.552 kb on + strand at 1803.552 kb on + strand at 1803.553 kb on - strand at 1803.553 kb on - strand at 1803.553 kb on - strand at 1803.553 kb on - strand at 1803.553 kb on - strand at 1803.553 kb on - strand at 1803.553 kb on - strand at 1803.701 kb on + strand at 1803.701 kb on + strand at 1803.702 kb on - strand at 1803.702 kb on - strand at 1803.702 kb on - strand at 1803.725 kb on + strand at 1803.726 kb on - strand at 1803.752 kb on - strand at 1803.870 kb on - strand, within QEN71_RS37570 at 1804.109 kb on + strand, within QEN71_RS37570 at 1804.109 kb on + strand, within QEN71_RS37570 at 1804.110 kb on - strand, within QEN71_RS37570 at 1804.215 kb on + strand at 1804.215 kb on + strand at 1804.215 kb on + strand at 1804.215 kb on + strand at 1804.275 kb on + strand at 1804.334 kb on + strand at 1804.334 kb on + strand at 1804.334 kb on + strand at 1804.335 kb on - strand at 1804.336 kb on + strand at 1804.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,801,558 + QEN71_RS37555 0.48 -2.5 1,801,559 - QEN71_RS37555 0.48 -0.2 1,801,559 - QEN71_RS37555 0.48 -0.8 1,801,559 - QEN71_RS37555 0.48 -3.0 1,801,657 + QEN71_RS37555 0.74 -3.8 1,801,657 + QEN71_RS37555 0.74 -3.9 1,801,776 + -2.6 1,801,776 + -2.1 1,801,801 + -4.8 1,801,802 - -0.7 1,801,828 - +0.0 1,801,835 + -2.2 1,801,836 - -0.9 1,801,855 + -0.3 1,801,855 + +2.1 1,801,855 + +1.9 1,801,855 + -0.4 1,801,855 + -1.2 1,801,855 + -0.1 1,801,855 + +0.1 1,801,855 + +0.5 1,801,855 + -0.9 1,801,856 - -0.1 1,801,856 - +0.9 1,801,856 - +0.0 1,801,856 - +1.1 1,801,856 - -0.1 1,801,856 - +0.1 1,801,856 - -0.1 1,801,856 - +0.7 1,801,859 + QEN71_RS37560 0.10 -0.9 1,801,859 + QEN71_RS37560 0.10 -0.4 1,801,859 + QEN71_RS37560 0.10 -2.3 1,801,859 + QEN71_RS37560 0.10 +0.5 1,801,860 - QEN71_RS37560 0.10 +1.5 1,801,863 + QEN71_RS37560 0.11 -1.4 1,801,863 + QEN71_RS37560 0.11 -0.4 1,801,863 + QEN71_RS37560 0.11 -1.2 1,801,863 + QEN71_RS37560 0.11 -0.2 1,801,864 - QEN71_RS37560 0.11 -1.0 1,801,864 - QEN71_RS37560 0.11 -0.2 1,801,864 - QEN71_RS37560 0.11 +0.2 1,801,865 + QEN71_RS37560 0.11 -0.4 1,801,866 - QEN71_RS37560 0.11 +0.3 1,801,866 - QEN71_RS37560 0.11 -0.9 1,801,866 - QEN71_RS37560 0.11 +0.5 1,801,911 + QEN71_RS37560 0.19 +0.7 1,802,007 + QEN71_RS37560 0.37 +1.3 1,802,007 + QEN71_RS37560 0.37 -1.5 1,802,007 + QEN71_RS37560 0.37 -1.2 1,802,007 + QEN71_RS37560 0.37 -0.1 1,802,008 - QEN71_RS37560 0.37 +0.6 1,802,008 - QEN71_RS37560 0.37 -0.4 1,802,008 - QEN71_RS37560 0.37 -1.3 1,802,011 + QEN71_RS37560 0.37 +0.6 1,802,011 + QEN71_RS37560 0.37 +0.0 1,802,011 + QEN71_RS37560 0.37 +0.4 1,802,011 + QEN71_RS37560 0.37 +1.3 1,802,011 + QEN71_RS37560 0.37 +2.6 1,802,011 + QEN71_RS37560 0.37 +0.1 1,802,011 + QEN71_RS37560 0.37 -0.7 1,802,011 + QEN71_RS37560 0.37 -2.9 1,802,011 + QEN71_RS37560 0.37 -0.8 1,802,012 - QEN71_RS37560 0.37 -1.8 1,802,012 - QEN71_RS37560 0.37 -0.9 1,802,012 - QEN71_RS37560 0.37 +0.2 1,802,100 + QEN71_RS37560 0.53 -0.1 1,802,100 + QEN71_RS37560 0.53 +2.0 1,802,101 - QEN71_RS37560 0.53 +0.6 1,802,101 - QEN71_RS37560 0.53 +1.4 1,802,239 + QEN71_RS37560 0.78 -0.6 1,802,239 + QEN71_RS37560 0.78 -0.6 1,802,273 + QEN71_RS37560 0.84 +0.8 1,802,398 + -0.5 1,802,398 + -1.0 1,802,399 - -0.3 1,802,399 - +0.1 1,802,399 - +0.3 1,802,399 - -2.0 1,802,412 + -0.6 1,802,413 - +0.3 1,802,438 + +0.7 1,802,439 - -1.4 1,802,439 - +0.3 1,802,439 - -0.4 1,802,526 + -2.4 1,802,652 + QEN71_RS37565 0.11 +0.1 1,802,653 - QEN71_RS37565 0.11 -1.3 1,802,694 + QEN71_RS37565 0.16 +0.5 1,802,695 - QEN71_RS37565 0.16 +0.1 1,802,695 - QEN71_RS37565 0.16 -0.6 1,802,960 + QEN71_RS37565 0.44 -1.2 1,803,125 + QEN71_RS37565 0.62 +0.1 1,803,411 - +0.3 1,803,552 + +0.4 1,803,552 + +2.0 1,803,553 - +0.0 1,803,553 - -0.1 1,803,553 - -0.6 1,803,553 - +1.1 1,803,553 - -2.0 1,803,553 - +0.1 1,803,553 - +0.4 1,803,701 + -1.4 1,803,701 + -0.6 1,803,702 - -0.2 1,803,702 - +0.0 1,803,702 - -0.0 1,803,725 + +0.2 1,803,726 - +0.2 1,803,752 - -0.7 1,803,870 - QEN71_RS37570 0.29 -0.9 1,804,109 + QEN71_RS37570 0.85 -0.0 1,804,109 + QEN71_RS37570 0.85 +0.6 1,804,110 - QEN71_RS37570 0.85 +0.1 1,804,215 + +0.0 1,804,215 + -0.4 1,804,215 + -0.1 1,804,215 + +0.4 1,804,275 + -2.6 1,804,334 + -2.3 1,804,334 + -1.9 1,804,334 + +1.2 1,804,335 - -0.2 1,804,336 + +1.7 1,804,337 - +1.6
Or see this region's nucleotide sequence