Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33690 and QEN71_RS33695 are separated by 72 nucleotides QEN71_RS33695 and QEN71_RS33700 are separated by 187 nucleotides
QEN71_RS33690: QEN71_RS33690 - acyl-CoA dehydrogenase family protein, at 879,634 to 881,028
_RS33690
QEN71_RS33695: QEN71_RS33695 - acyl-CoA dehydrogenase family protein, at 881,101 to 882,396
_RS33695
QEN71_RS33700: QEN71_RS33700 - ArsR family transcriptional regulator, at 882,584 to 883,225
_RS33700
Position (kb) 881
882
883 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 880.358 kb on + strand, within QEN71_RS33690 at 880.643 kb on + strand, within QEN71_RS33690 at 880.830 kb on - strand, within QEN71_RS33690 at 880.868 kb on + strand, within QEN71_RS33690 at 880.869 kb on - strand, within QEN71_RS33690 at 880.869 kb on - strand, within QEN71_RS33690 at 881.103 kb on - strand at 881.103 kb on - strand at 881.218 kb on - strand at 881.259 kb on + strand, within QEN71_RS33695 at 881.292 kb on + strand, within QEN71_RS33695 at 881.405 kb on + strand, within QEN71_RS33695 at 881.429 kb on + strand, within QEN71_RS33695 at 881.471 kb on + strand, within QEN71_RS33695 at 881.471 kb on + strand, within QEN71_RS33695 at 881.472 kb on - strand, within QEN71_RS33695 at 881.472 kb on - strand, within QEN71_RS33695 at 881.738 kb on + strand, within QEN71_RS33695 at 881.739 kb on - strand, within QEN71_RS33695 at 881.895 kb on - strand, within QEN71_RS33695 at 882.012 kb on - strand, within QEN71_RS33695 at 882.021 kb on - strand, within QEN71_RS33695 at 882.021 kb on - strand, within QEN71_RS33695 at 882.021 kb on - strand, within QEN71_RS33695 at 882.236 kb on + strand, within QEN71_RS33695 at 882.236 kb on + strand, within QEN71_RS33695 at 882.247 kb on - strand, within QEN71_RS33695 at 882.248 kb on + strand, within QEN71_RS33695 at 882.249 kb on - strand, within QEN71_RS33695 at 882.429 kb on + strand at 882.476 kb on + strand at 882.476 kb on + strand at 882.585 kb on + strand at 882.586 kb on - strand at 882.586 kb on - strand at 882.709 kb on - strand, within QEN71_RS33700 at 882.729 kb on + strand, within QEN71_RS33700 at 882.730 kb on - strand, within QEN71_RS33700 at 882.910 kb on - strand, within QEN71_RS33700 at 882.910 kb on - strand, within QEN71_RS33700 at 883.021 kb on - strand, within QEN71_RS33700 at 883.021 kb on - strand, within QEN71_RS33700 at 883.021 kb on - strand, within QEN71_RS33700 at 883.021 kb on - strand, within QEN71_RS33700 at 883.225 kb on + strand at 883.226 kb on - strand at 883.226 kb on - strand at 883.275 kb on - strand at 883.275 kb on - strand at 883.384 kb on + strand at 883.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 880,358 + QEN71_RS33690 0.52 -1.0 880,643 + QEN71_RS33690 0.72 +1.6 880,830 - QEN71_RS33690 0.86 -0.2 880,868 + QEN71_RS33690 0.88 +0.4 880,869 - QEN71_RS33690 0.89 +0.1 880,869 - QEN71_RS33690 0.89 +0.0 881,103 - -0.0 881,103 - -0.0 881,218 - -0.3 881,259 + QEN71_RS33695 0.12 -2.0 881,292 + QEN71_RS33695 0.15 -0.6 881,405 + QEN71_RS33695 0.23 +1.8 881,429 + QEN71_RS33695 0.25 +0.0 881,471 + QEN71_RS33695 0.29 -0.1 881,471 + QEN71_RS33695 0.29 -0.1 881,472 - QEN71_RS33695 0.29 +0.8 881,472 - QEN71_RS33695 0.29 -0.3 881,738 + QEN71_RS33695 0.49 +1.0 881,739 - QEN71_RS33695 0.49 -0.7 881,895 - QEN71_RS33695 0.61 +0.2 882,012 - QEN71_RS33695 0.70 +0.9 882,021 - QEN71_RS33695 0.71 -0.5 882,021 - QEN71_RS33695 0.71 -0.2 882,021 - QEN71_RS33695 0.71 -0.1 882,236 + QEN71_RS33695 0.88 -0.5 882,236 + QEN71_RS33695 0.88 -0.2 882,247 - QEN71_RS33695 0.88 +0.3 882,248 + QEN71_RS33695 0.89 +3.3 882,249 - QEN71_RS33695 0.89 -1.7 882,429 + +0.2 882,476 + +0.8 882,476 + +0.0 882,585 + -0.1 882,586 - -1.3 882,586 - -1.8 882,709 - QEN71_RS33700 0.19 +0.6 882,729 + QEN71_RS33700 0.23 +0.7 882,730 - QEN71_RS33700 0.23 -0.3 882,910 - QEN71_RS33700 0.51 +0.1 882,910 - QEN71_RS33700 0.51 -1.1 883,021 - QEN71_RS33700 0.68 +1.7 883,021 - QEN71_RS33700 0.68 -1.1 883,021 - QEN71_RS33700 0.68 -1.2 883,021 - QEN71_RS33700 0.68 -1.6 883,225 + +0.6 883,226 - -1.1 883,226 - -1.3 883,275 - +0.7 883,275 - -0.1 883,384 + +4.6 883,385 - +0.2
Or see this region's nucleotide sequence