Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS32795

Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS32785 and QEN71_RS32790 overlap by 22 nucleotidesQEN71_RS32790 and QEN71_RS32795 are separated by 18 nucleotidesQEN71_RS32795 and QEN71_RS32800 are separated by 323 nucleotidesQEN71_RS32800 and QEN71_RS32805 are separated by 35 nucleotides QEN71_RS32785: QEN71_RS32785 - DUF6513 domain-containing protein, at 687,483 to 688,862 _RS32785 QEN71_RS32790: QEN71_RS32790 - flavoprotein, at 688,841 to 689,440 _RS32790 QEN71_RS32795: QEN71_RS32795 - sigma-54-dependent Fis family transcriptional regulator, at 689,459 to 691,564 _RS32795 QEN71_RS32800: QEN71_RS32800 - dihydroneopterin aldolase, at 691,888 to 692,367 _RS32800 QEN71_RS32805: QEN71_RS32805 - hypothetical protein, at 692,403 to 692,819 _RS32805 Position (kb) 689 690 691 692Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 688.484 kb on + strand, within QEN71_RS32785at 688.484 kb on + strand, within QEN71_RS32785at 688.484 kb on + strand, within QEN71_RS32785at 688.484 kb on + strand, within QEN71_RS32785at 688.485 kb on - strand, within QEN71_RS32785at 689.086 kb on - strand, within QEN71_RS32790at 689.105 kb on - strand, within QEN71_RS32790at 689.137 kb on + strand, within QEN71_RS32790at 689.138 kb on - strand, within QEN71_RS32790at 689.172 kb on + strand, within QEN71_RS32790at 689.173 kb on - strand, within QEN71_RS32790at 689.173 kb on - strand, within QEN71_RS32790at 689.173 kb on - strand, within QEN71_RS32790at 689.173 kb on - strand, within QEN71_RS32790at 689.268 kb on + strand, within QEN71_RS32790at 689.269 kb on - strand, within QEN71_RS32790at 689.449 kb on + strandat 689.450 kb on - strandat 689.450 kb on - strandat 689.865 kb on + strand, within QEN71_RS32795at 689.865 kb on + strand, within QEN71_RS32795at 689.865 kb on + strand, within QEN71_RS32795at 689.865 kb on + strand, within QEN71_RS32795at 690.006 kb on + strand, within QEN71_RS32795at 690.009 kb on + strand, within QEN71_RS32795at 690.009 kb on + strand, within QEN71_RS32795at 690.010 kb on - strand, within QEN71_RS32795at 690.010 kb on - strand, within QEN71_RS32795at 690.010 kb on - strand, within QEN71_RS32795at 690.172 kb on + strand, within QEN71_RS32795at 690.691 kb on - strand, within QEN71_RS32795at 690.691 kb on - strand, within QEN71_RS32795at 690.691 kb on - strand, within QEN71_RS32795at 690.691 kb on - strand, within QEN71_RS32795at 691.093 kb on + strand, within QEN71_RS32795at 691.093 kb on + strand, within QEN71_RS32795at 691.093 kb on + strand, within QEN71_RS32795at 691.093 kb on + strand, within QEN71_RS32795at 691.094 kb on - strand, within QEN71_RS32795at 691.094 kb on - strand, within QEN71_RS32795at 691.094 kb on - strand, within QEN71_RS32795at 691.094 kb on - strand, within QEN71_RS32795at 691.094 kb on - strand, within QEN71_RS32795at 691.094 kb on - strand, within QEN71_RS32795at 691.094 kb on - strand, within QEN71_RS32795at 691.094 kb on - strand, within QEN71_RS32795at 691.122 kb on + strand, within QEN71_RS32795at 691.123 kb on - strand, within QEN71_RS32795at 691.123 kb on - strand, within QEN71_RS32795at 691.172 kb on - strand, within QEN71_RS32795at 691.523 kb on + strandat 691.523 kb on + strandat 691.524 kb on - strandat 691.565 kb on + strandat 691.623 kb on + strandat 691.623 kb on + strandat 691.624 kb on - strandat 691.630 kb on + strandat 691.630 kb on + strandat 691.631 kb on - strandat 691.631 kb on - strandat 691.631 kb on - strandat 691.631 kb on - strandat 691.634 kb on + strandat 691.634 kb on + strandat 691.635 kb on - strandat 691.635 kb on - strandat 691.661 kb on - strandat 691.702 kb on + strandat 691.703 kb on - strandat 691.743 kb on + strandat 691.743 kb on + strandat 691.743 kb on + strandat 691.744 kb on - strandat 691.744 kb on - strandat 691.744 kb on - strandat 691.760 kb on + strandat 691.760 kb on + strandat 691.768 kb on + strandat 691.768 kb on + strandat 691.769 kb on - strandat 691.773 kb on - strandat 691.779 kb on - strandat 691.779 kb on - strandat 691.885 kb on + strandat 691.885 kb on + strandat 691.885 kb on + strandat 691.885 kb on + strandat 691.886 kb on - strandat 691.926 kb on + strandat 691.927 kb on - strandat 692.017 kb on + strand, within QEN71_RS32800at 692.018 kb on - strand, within QEN71_RS32800at 692.369 kb on + strandat 692.473 kb on + strand, within QEN71_RS32805at 692.543 kb on - strand, within QEN71_RS32805

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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688,484 + QEN71_RS32785 0.73 -0.5
688,484 + QEN71_RS32785 0.73 -1.2
688,484 + QEN71_RS32785 0.73 -1.1
688,484 + QEN71_RS32785 0.73 -1.2
688,485 - QEN71_RS32785 0.73 -0.3
689,086 - QEN71_RS32790 0.41 +0.3
689,105 - QEN71_RS32790 0.44 +0.5
689,137 + QEN71_RS32790 0.49 +0.0
689,138 - QEN71_RS32790 0.49 +0.5
689,172 + QEN71_RS32790 0.55 -0.7
689,173 - QEN71_RS32790 0.55 +0.9
689,173 - QEN71_RS32790 0.55 +0.6
689,173 - QEN71_RS32790 0.55 -0.7
689,173 - QEN71_RS32790 0.55 -1.5
689,268 + QEN71_RS32790 0.71 +0.7
689,269 - QEN71_RS32790 0.71 +3.3
689,449 + -0.0
689,450 - +0.7
689,450 - -0.3
689,865 + QEN71_RS32795 0.19 -0.7
689,865 + QEN71_RS32795 0.19 -0.3
689,865 + QEN71_RS32795 0.19 +0.4
689,865 + QEN71_RS32795 0.19 +1.0
690,006 + QEN71_RS32795 0.26 +1.2
690,009 + QEN71_RS32795 0.26 -0.9
690,009 + QEN71_RS32795 0.26 +0.5
690,010 - QEN71_RS32795 0.26 +0.7
690,010 - QEN71_RS32795 0.26 +0.4
690,010 - QEN71_RS32795 0.26 +0.3
690,172 + QEN71_RS32795 0.34 -0.7
690,691 - QEN71_RS32795 0.58 +1.6
690,691 - QEN71_RS32795 0.58 -0.4
690,691 - QEN71_RS32795 0.58 -1.1
690,691 - QEN71_RS32795 0.58 -0.7
691,093 + QEN71_RS32795 0.78 -0.7
691,093 + QEN71_RS32795 0.78 -0.4
691,093 + QEN71_RS32795 0.78 +0.9
691,093 + QEN71_RS32795 0.78 -0.7
691,094 - QEN71_RS32795 0.78 +0.6
691,094 - QEN71_RS32795 0.78 +0.5
691,094 - QEN71_RS32795 0.78 +0.9
691,094 - QEN71_RS32795 0.78 +0.3
691,094 - QEN71_RS32795 0.78 +1.4
691,094 - QEN71_RS32795 0.78 +0.7
691,094 - QEN71_RS32795 0.78 +0.6
691,094 - QEN71_RS32795 0.78 +0.8
691,122 + QEN71_RS32795 0.79 -0.7
691,123 - QEN71_RS32795 0.79 -0.3
691,123 - QEN71_RS32795 0.79 -0.9
691,172 - QEN71_RS32795 0.81 -0.3
691,523 + -0.4
691,523 + -0.3
691,524 - -2.3
691,565 + +0.6
691,623 + -1.0
691,623 + +3.7
691,624 - -0.3
691,630 + -0.2
691,630 + -0.3
691,631 - +0.3
691,631 - -1.8
691,631 - -1.1
691,631 - +0.7
691,634 + +0.3
691,634 + -1.0
691,635 - -0.6
691,635 - -0.0
691,661 - -1.4
691,702 + +0.5
691,703 - -0.5
691,743 + -0.4
691,743 + +0.5
691,743 + -0.1
691,744 - +0.8
691,744 - -1.3
691,744 - +0.3
691,760 + +0.8
691,760 + -3.9
691,768 + +0.3
691,768 + +0.0
691,769 - -0.8
691,773 - +0.1
691,779 - -2.0
691,779 - -0.6
691,885 + -0.0
691,885 + +0.2
691,885 + +0.6
691,885 + +0.2
691,886 - +0.9
691,926 + -0.7
691,927 - -0.4
692,017 + QEN71_RS32800 0.27 +2.6
692,018 - QEN71_RS32800 0.27 +0.3
692,369 + +1.0
692,473 + QEN71_RS32805 0.17 +0.3
692,543 - QEN71_RS32805 0.34 +0.6

Or see this region's nucleotide sequence