Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32270 and QEN71_RS32275 are separated by 44 nucleotides QEN71_RS32275 and QEN71_RS32280 are separated by 204 nucleotides QEN71_RS32280 and QEN71_RS32285 are separated by 578 nucleotides
QEN71_RS32270: QEN71_RS32270 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 581,729 to 582,355
_RS32270
QEN71_RS32275: QEN71_RS32275 - hypothetical protein, at 582,400 to 582,711
_RS32275
QEN71_RS32280: QEN71_RS32280 - lyase, at 582,916 to 583,863
_RS32280
QEN71_RS32285: QEN71_RS32285 - branched-chain amino acid ABC transporter substrate-binding protein, at 584,442 to 585,578
_RS32285
Position (kb) 582
583
584 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 582.062 kb on + strand, within QEN71_RS32270 at 582.062 kb on + strand, within QEN71_RS32270 at 582.077 kb on + strand, within QEN71_RS32270 at 582.098 kb on - strand, within QEN71_RS32270 at 582.233 kb on + strand, within QEN71_RS32270 at 582.233 kb on + strand, within QEN71_RS32270 at 582.353 kb on + strand at 582.353 kb on + strand at 582.353 kb on + strand at 582.353 kb on + strand at 582.428 kb on + strand at 582.428 kb on + strand at 582.429 kb on - strand at 582.588 kb on + strand, within QEN71_RS32275 at 582.588 kb on + strand, within QEN71_RS32275 at 582.589 kb on - strand, within QEN71_RS32275 at 582.636 kb on + strand, within QEN71_RS32275 at 582.636 kb on + strand, within QEN71_RS32275 at 582.677 kb on + strand, within QEN71_RS32275 at 582.677 kb on + strand, within QEN71_RS32275 at 582.715 kb on - strand at 582.738 kb on - strand at 582.741 kb on + strand at 582.741 kb on + strand at 582.742 kb on - strand at 582.742 kb on - strand at 582.742 kb on - strand at 582.743 kb on - strand at 582.746 kb on + strand at 582.899 kb on + strand at 582.900 kb on - strand at 582.900 kb on - strand at 583.092 kb on + strand, within QEN71_RS32280 at 583.145 kb on + strand, within QEN71_RS32280 at 583.145 kb on + strand, within QEN71_RS32280 at 583.145 kb on + strand, within QEN71_RS32280 at 583.145 kb on + strand, within QEN71_RS32280 at 583.146 kb on - strand, within QEN71_RS32280 at 583.146 kb on - strand, within QEN71_RS32280 at 583.146 kb on - strand, within QEN71_RS32280 at 583.207 kb on + strand, within QEN71_RS32280 at 583.347 kb on - strand, within QEN71_RS32280 at 583.347 kb on - strand, within QEN71_RS32280 at 583.371 kb on - strand, within QEN71_RS32280 at 583.371 kb on - strand, within QEN71_RS32280 at 583.404 kb on - strand, within QEN71_RS32280 at 583.469 kb on + strand, within QEN71_RS32280 at 583.469 kb on + strand, within QEN71_RS32280 at 583.469 kb on + strand, within QEN71_RS32280 at 583.470 kb on - strand, within QEN71_RS32280 at 583.525 kb on - strand, within QEN71_RS32280 at 583.654 kb on + strand, within QEN71_RS32280 at 583.751 kb on + strand, within QEN71_RS32280 at 583.852 kb on + strand at 583.859 kb on - strand at 583.999 kb on + strand at 584.000 kb on - strand at 584.000 kb on - strand at 584.000 kb on - strand at 584.000 kb on - strand at 584.164 kb on - strand at 584.164 kb on - strand at 584.175 kb on + strand at 584.175 kb on + strand at 584.176 kb on - strand at 584.176 kb on - strand at 584.329 kb on + strand at 584.749 kb on - strand, within QEN71_RS32285 at 584.749 kb on - strand, within QEN71_RS32285 at 584.749 kb on - strand, within QEN71_RS32285 at 584.749 kb on - strand, within QEN71_RS32285
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 582,062 + QEN71_RS32270 0.53 +0.1 582,062 + QEN71_RS32270 0.53 +0.5 582,077 + QEN71_RS32270 0.56 +0.3 582,098 - QEN71_RS32270 0.59 +1.3 582,233 + QEN71_RS32270 0.80 -0.1 582,233 + QEN71_RS32270 0.80 -2.1 582,353 + +0.6 582,353 + +0.2 582,353 + -0.5 582,353 + -1.0 582,428 + -1.5 582,428 + -0.5 582,429 - -1.5 582,588 + QEN71_RS32275 0.60 +0.5 582,588 + QEN71_RS32275 0.60 -0.7 582,589 - QEN71_RS32275 0.61 -0.5 582,636 + QEN71_RS32275 0.76 +0.1 582,636 + QEN71_RS32275 0.76 -0.5 582,677 + QEN71_RS32275 0.89 -1.3 582,677 + QEN71_RS32275 0.89 -0.3 582,715 - +0.5 582,738 - +0.9 582,741 + +0.3 582,741 + +1.1 582,742 - +0.4 582,742 - +0.2 582,742 - -0.3 582,743 - -0.7 582,746 + -1.2 582,899 + +1.0 582,900 - +0.4 582,900 - -0.9 583,092 + QEN71_RS32280 0.19 +0.7 583,145 + QEN71_RS32280 0.24 -0.7 583,145 + QEN71_RS32280 0.24 -0.7 583,145 + QEN71_RS32280 0.24 +1.0 583,145 + QEN71_RS32280 0.24 -0.5 583,146 - QEN71_RS32280 0.24 -1.6 583,146 - QEN71_RS32280 0.24 -0.9 583,146 - QEN71_RS32280 0.24 -0.2 583,207 + QEN71_RS32280 0.31 +2.2 583,347 - QEN71_RS32280 0.45 +2.8 583,347 - QEN71_RS32280 0.45 -0.6 583,371 - QEN71_RS32280 0.48 -1.2 583,371 - QEN71_RS32280 0.48 -0.3 583,404 - QEN71_RS32280 0.51 +1.3 583,469 + QEN71_RS32280 0.58 +0.3 583,469 + QEN71_RS32280 0.58 +0.8 583,469 + QEN71_RS32280 0.58 +1.1 583,470 - QEN71_RS32280 0.58 -0.1 583,525 - QEN71_RS32280 0.64 -1.1 583,654 + QEN71_RS32280 0.78 +0.2 583,751 + QEN71_RS32280 0.88 -0.0 583,852 + +0.7 583,859 - -0.9 583,999 + -0.4 584,000 - -0.3 584,000 - -1.0 584,000 - +0.3 584,000 - +0.0 584,164 - -0.2 584,164 - +0.3 584,175 + -0.8 584,175 + +1.1 584,176 - +0.4 584,176 - -0.5 584,329 + +0.8 584,749 - QEN71_RS32285 0.27 +0.8 584,749 - QEN71_RS32285 0.27 +0.2 584,749 - QEN71_RS32285 0.27 -0.5 584,749 - QEN71_RS32285 0.27 +0.3
Or see this region's nucleotide sequence