Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32135 and QEN71_RS32140 are separated by 526 nucleotides QEN71_RS32140 and QEN71_RS32145 are separated by 90 nucleotides QEN71_RS32145 and QEN71_RS32150 are separated by 89 nucleotides
QEN71_RS32135: QEN71_RS32135 - GntR family transcriptional regulator, at 550,789 to 551,490
_RS32135
QEN71_RS32140: QEN71_RS32140 - porin, at 552,017 to 553,237
_RS32140
QEN71_RS32145: QEN71_RS32145 - 5'/3'-nucleotidase SurE, at 553,328 to 554,113
_RS32145
QEN71_RS32150: QEN71_RS32150 - DEAD/DEAH box helicase, at 554,203 to 555,666
_RS32150
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 551.249 kb on - strand, within QEN71_RS32135 at 551.267 kb on - strand, within QEN71_RS32135 at 551.267 kb on - strand, within QEN71_RS32135 at 551.297 kb on + strand, within QEN71_RS32135 at 551.392 kb on + strand, within QEN71_RS32135 at 551.393 kb on - strand, within QEN71_RS32135 at 551.490 kb on + strand at 551.490 kb on + strand at 551.491 kb on - strand at 551.499 kb on - strand at 551.516 kb on + strand at 551.519 kb on - strand at 551.550 kb on + strand at 551.551 kb on - strand at 551.552 kb on + strand at 551.739 kb on + strand at 551.739 kb on + strand at 551.740 kb on - strand at 551.759 kb on + strand at 551.781 kb on + strand at 551.781 kb on + strand at 551.970 kb on - strand at 551.970 kb on - strand at 551.990 kb on - strand at 552.317 kb on + strand, within QEN71_RS32140 at 552.347 kb on + strand, within QEN71_RS32140 at 552.347 kb on + strand, within QEN71_RS32140 at 552.372 kb on - strand, within QEN71_RS32140 at 552.408 kb on - strand, within QEN71_RS32140 at 552.459 kb on - strand, within QEN71_RS32140 at 552.459 kb on - strand, within QEN71_RS32140 at 552.459 kb on - strand, within QEN71_RS32140 at 552.524 kb on + strand, within QEN71_RS32140 at 552.525 kb on - strand, within QEN71_RS32140 at 552.542 kb on + strand, within QEN71_RS32140 at 552.542 kb on + strand, within QEN71_RS32140 at 552.629 kb on + strand, within QEN71_RS32140 at 552.629 kb on + strand, within QEN71_RS32140 at 552.697 kb on + strand, within QEN71_RS32140 at 552.697 kb on + strand, within QEN71_RS32140 at 552.748 kb on - strand, within QEN71_RS32140 at 552.814 kb on + strand, within QEN71_RS32140 at 552.864 kb on - strand, within QEN71_RS32140 at 552.968 kb on + strand, within QEN71_RS32140 at 552.974 kb on + strand, within QEN71_RS32140 at 552.974 kb on + strand, within QEN71_RS32140 at 553.073 kb on + strand, within QEN71_RS32140 at 553.074 kb on - strand, within QEN71_RS32140 at 553.074 kb on - strand, within QEN71_RS32140 at 553.247 kb on + strand at 553.254 kb on + strand at 553.254 kb on + strand at 553.290 kb on + strand at 553.290 kb on + strand at 553.291 kb on - strand at 553.955 kb on + strand, within QEN71_RS32145 at 554.051 kb on + strand at 554.074 kb on + strand at 554.075 kb on - strand at 554.123 kb on + strand at 554.124 kb on - strand at 554.124 kb on - strand at 554.124 kb on - strand at 554.187 kb on - strand at 554.196 kb on + strand at 554.196 kb on + strand at 554.196 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 551,249 - QEN71_RS32135 0.66 +0.9 551,267 - QEN71_RS32135 0.68 +0.6 551,267 - QEN71_RS32135 0.68 +3.1 551,297 + QEN71_RS32135 0.72 +0.5 551,392 + QEN71_RS32135 0.86 -0.6 551,393 - QEN71_RS32135 0.86 -0.9 551,490 + -0.3 551,490 + +1.4 551,491 - -0.3 551,499 - -1.0 551,516 + -0.4 551,519 - -0.8 551,550 + +0.9 551,551 - -0.4 551,552 + +0.4 551,739 + -3.0 551,739 + +1.0 551,740 - +0.1 551,759 + +1.0 551,781 + -0.5 551,781 + +0.3 551,970 - -0.2 551,970 - +0.3 551,990 - -1.4 552,317 + QEN71_RS32140 0.25 +1.5 552,347 + QEN71_RS32140 0.27 -0.5 552,347 + QEN71_RS32140 0.27 -0.2 552,372 - QEN71_RS32140 0.29 +0.3 552,408 - QEN71_RS32140 0.32 -0.4 552,459 - QEN71_RS32140 0.36 -0.2 552,459 - QEN71_RS32140 0.36 -0.0 552,459 - QEN71_RS32140 0.36 -1.1 552,524 + QEN71_RS32140 0.42 -0.6 552,525 - QEN71_RS32140 0.42 -0.0 552,542 + QEN71_RS32140 0.43 -0.3 552,542 + QEN71_RS32140 0.43 -0.5 552,629 + QEN71_RS32140 0.50 +0.9 552,629 + QEN71_RS32140 0.50 +0.2 552,697 + QEN71_RS32140 0.56 -0.1 552,697 + QEN71_RS32140 0.56 +0.8 552,748 - QEN71_RS32140 0.60 -0.9 552,814 + QEN71_RS32140 0.65 -1.7 552,864 - QEN71_RS32140 0.69 -0.9 552,968 + QEN71_RS32140 0.78 -1.4 552,974 + QEN71_RS32140 0.78 +0.3 552,974 + QEN71_RS32140 0.78 -1.2 553,073 + QEN71_RS32140 0.86 -0.3 553,074 - QEN71_RS32140 0.87 -1.2 553,074 - QEN71_RS32140 0.87 -2.0 553,247 + +0.6 553,254 + +1.9 553,254 + -0.9 553,290 + -1.1 553,290 + -0.4 553,291 - +1.1 553,955 + QEN71_RS32145 0.80 +3.0 554,051 + +2.0 554,074 + +0.8 554,075 - +1.0 554,123 + -0.5 554,124 - +1.1 554,124 - +0.9 554,124 - -0.3 554,187 - -0.3 554,196 + -0.2 554,196 + +0.2 554,196 + -1.0
Or see this region's nucleotide sequence