Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32025 and QEN71_RS32030 are separated by 3 nucleotides QEN71_RS32030 and QEN71_RS32035 are separated by 210 nucleotides QEN71_RS32035 and QEN71_RS32040 are separated by 55 nucleotides QEN71_RS32040 and QEN71_RS32045 are separated by 13 nucleotides
QEN71_RS32025: QEN71_RS32025 - glyoxylate/hydroxypyruvate reductase A, at 535,880 to 536,806
_RS32025
QEN71_RS32030: QEN71_RS32030 - GNAT family N-acetyltransferase, at 536,810 to 537,694
_RS32030
QEN71_RS32035: QEN71_RS32035 - hypothetical protein, at 537,905 to 538,069
_RS32035
QEN71_RS32040: QEN71_RS32040 - universal stress protein, at 538,125 to 538,610
_RS32040
QEN71_RS32045: QEN71_RS32045 - hypothetical protein, at 538,624 to 538,908
_RS32045
Position (kb) 536
537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 536.043 kb on - strand, within QEN71_RS32025 at 536.514 kb on + strand, within QEN71_RS32025 at 536.514 kb on + strand, within QEN71_RS32025 at 536.514 kb on + strand, within QEN71_RS32025 at 536.514 kb on + strand, within QEN71_RS32025 at 536.514 kb on + strand, within QEN71_RS32025 at 536.515 kb on - strand, within QEN71_RS32025 at 536.515 kb on - strand, within QEN71_RS32025 at 536.793 kb on + strand at 536.793 kb on + strand at 536.794 kb on - strand at 536.794 kb on - strand at 536.811 kb on + strand at 536.812 kb on - strand at 536.867 kb on + strand at 536.868 kb on - strand at 537.119 kb on - strand, within QEN71_RS32030 at 537.339 kb on + strand, within QEN71_RS32030 at 537.489 kb on + strand, within QEN71_RS32030 at 537.490 kb on - strand, within QEN71_RS32030 at 537.716 kb on - strand at 537.752 kb on + strand at 537.864 kb on + strand at 537.864 kb on + strand at 537.864 kb on + strand at 537.864 kb on + strand at 537.864 kb on + strand at 537.864 kb on + strand at 537.865 kb on - strand at 537.865 kb on - strand at 537.873 kb on - strand at 537.916 kb on + strand at 537.917 kb on - strand at 538.135 kb on + strand at 538.291 kb on - strand, within QEN71_RS32040 at 538.407 kb on + strand, within QEN71_RS32040 at 538.408 kb on - strand, within QEN71_RS32040 at 538.457 kb on + strand, within QEN71_RS32040 at 538.510 kb on - strand, within QEN71_RS32040 at 538.510 kb on - strand, within QEN71_RS32040 at 538.625 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 536,043 - QEN71_RS32025 0.18 -1.2 536,514 + QEN71_RS32025 0.68 +0.6 536,514 + QEN71_RS32025 0.68 -0.5 536,514 + QEN71_RS32025 0.68 -0.2 536,514 + QEN71_RS32025 0.68 -0.7 536,514 + QEN71_RS32025 0.68 -0.0 536,515 - QEN71_RS32025 0.69 +0.3 536,515 - QEN71_RS32025 0.69 -0.9 536,793 + +1.9 536,793 + +0.7 536,794 - -1.5 536,794 - -0.9 536,811 + +0.4 536,812 - +1.0 536,867 + +0.2 536,868 - -0.6 537,119 - QEN71_RS32030 0.35 -0.1 537,339 + QEN71_RS32030 0.60 +0.8 537,489 + QEN71_RS32030 0.77 -1.9 537,490 - QEN71_RS32030 0.77 -0.7 537,716 - +0.7 537,752 + +1.7 537,864 + +0.6 537,864 + +0.2 537,864 + +0.3 537,864 + -0.5 537,864 + -0.2 537,864 + -2.9 537,865 - +0.4 537,865 - -1.3 537,873 - +0.9 537,916 + +0.3 537,917 - -0.1 538,135 + +0.3 538,291 - QEN71_RS32040 0.34 +0.9 538,407 + QEN71_RS32040 0.58 +0.4 538,408 - QEN71_RS32040 0.58 -0.7 538,457 + QEN71_RS32040 0.68 -0.3 538,510 - QEN71_RS32040 0.79 -2.2 538,510 - QEN71_RS32040 0.79 -0.2 538,625 + +1.3
Or see this region's nucleotide sequence