Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31800 and QEN71_RS31805 are separated by 137 nucleotides QEN71_RS31805 and QEN71_RS31810 are separated by 8 nucleotides
QEN71_RS31800: QEN71_RS31800 - LysR substrate-binding domain-containing protein, at 485,135 to 486,052
_RS31800
QEN71_RS31805: QEN71_RS31805 - hydroxymethylglutaryl-CoA lyase, at 486,190 to 487,137
_RS31805
QEN71_RS31810: QEN71_RS31810 - CaiB/BaiF CoA-transferase family protein, at 487,146 to 488,297
_RS31810
Position (kb) 486
487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 485.205 kb on - strand at 485.205 kb on - strand at 485.296 kb on - strand, within QEN71_RS31800 at 485.296 kb on - strand, within QEN71_RS31800 at 485.296 kb on - strand, within QEN71_RS31800 at 485.296 kb on - strand, within QEN71_RS31800 at 485.296 kb on - strand, within QEN71_RS31800 at 485.299 kb on + strand, within QEN71_RS31800 at 485.300 kb on - strand, within QEN71_RS31800 at 485.388 kb on + strand, within QEN71_RS31800 at 485.389 kb on - strand, within QEN71_RS31800 at 485.473 kb on - strand, within QEN71_RS31800 at 485.483 kb on - strand, within QEN71_RS31800 at 485.678 kb on + strand, within QEN71_RS31800 at 485.678 kb on + strand, within QEN71_RS31800 at 485.678 kb on + strand, within QEN71_RS31800 at 485.678 kb on + strand, within QEN71_RS31800 at 485.679 kb on - strand, within QEN71_RS31800 at 485.679 kb on - strand, within QEN71_RS31800 at 485.679 kb on - strand, within QEN71_RS31800 at 485.679 kb on - strand, within QEN71_RS31800 at 485.679 kb on - strand, within QEN71_RS31800 at 485.765 kb on + strand, within QEN71_RS31800 at 485.766 kb on - strand, within QEN71_RS31800 at 486.112 kb on + strand at 486.112 kb on + strand at 486.113 kb on - strand at 486.133 kb on - strand at 486.139 kb on - strand at 486.304 kb on + strand, within QEN71_RS31805 at 486.305 kb on - strand, within QEN71_RS31805 at 486.376 kb on - strand, within QEN71_RS31805 at 486.394 kb on + strand, within QEN71_RS31805 at 486.394 kb on + strand, within QEN71_RS31805 at 486.648 kb on - strand, within QEN71_RS31805 at 486.648 kb on - strand, within QEN71_RS31805 at 486.648 kb on - strand, within QEN71_RS31805 at 486.856 kb on + strand, within QEN71_RS31805 at 486.856 kb on + strand, within QEN71_RS31805 at 486.857 kb on - strand, within QEN71_RS31805 at 487.017 kb on - strand, within QEN71_RS31805 at 487.468 kb on - strand, within QEN71_RS31810 at 487.503 kb on + strand, within QEN71_RS31810 at 487.504 kb on - strand, within QEN71_RS31810 at 487.504 kb on - strand, within QEN71_RS31810 at 487.504 kb on - strand, within QEN71_RS31810 at 487.536 kb on + strand, within QEN71_RS31810 at 487.591 kb on - strand, within QEN71_RS31810 at 487.769 kb on + strand, within QEN71_RS31810 at 487.769 kb on + strand, within QEN71_RS31810 at 487.770 kb on - strand, within QEN71_RS31810 at 487.780 kb on - strand, within QEN71_RS31810
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 485,205 - +0.2 485,205 - +0.1 485,296 - QEN71_RS31800 0.18 -0.4 485,296 - QEN71_RS31800 0.18 -1.3 485,296 - QEN71_RS31800 0.18 -0.7 485,296 - QEN71_RS31800 0.18 -0.2 485,296 - QEN71_RS31800 0.18 -0.8 485,299 + QEN71_RS31800 0.18 -1.4 485,300 - QEN71_RS31800 0.18 +0.3 485,388 + QEN71_RS31800 0.28 -0.3 485,389 - QEN71_RS31800 0.28 -0.5 485,473 - QEN71_RS31800 0.37 -0.6 485,483 - QEN71_RS31800 0.38 +1.3 485,678 + QEN71_RS31800 0.59 -2.2 485,678 + QEN71_RS31800 0.59 -3.0 485,678 + QEN71_RS31800 0.59 +0.0 485,678 + QEN71_RS31800 0.59 +0.4 485,679 - QEN71_RS31800 0.59 -0.2 485,679 - QEN71_RS31800 0.59 +1.6 485,679 - QEN71_RS31800 0.59 -0.5 485,679 - QEN71_RS31800 0.59 -0.7 485,679 - QEN71_RS31800 0.59 -0.6 485,765 + QEN71_RS31800 0.69 -0.8 485,766 - QEN71_RS31800 0.69 -0.3 486,112 + +2.0 486,112 + -2.1 486,113 - +1.3 486,133 - -0.7 486,139 - -1.2 486,304 + QEN71_RS31805 0.12 +0.4 486,305 - QEN71_RS31805 0.12 -0.4 486,376 - QEN71_RS31805 0.20 +1.3 486,394 + QEN71_RS31805 0.22 -0.4 486,394 + QEN71_RS31805 0.22 -1.5 486,648 - QEN71_RS31805 0.48 +0.2 486,648 - QEN71_RS31805 0.48 -1.8 486,648 - QEN71_RS31805 0.48 -0.3 486,856 + QEN71_RS31805 0.70 -0.7 486,856 + QEN71_RS31805 0.70 -0.5 486,857 - QEN71_RS31805 0.70 +1.1 487,017 - QEN71_RS31805 0.87 +0.0 487,468 - QEN71_RS31810 0.28 +0.7 487,503 + QEN71_RS31810 0.31 -0.6 487,504 - QEN71_RS31810 0.31 -2.2 487,504 - QEN71_RS31810 0.31 -1.0 487,504 - QEN71_RS31810 0.31 -0.3 487,536 + QEN71_RS31810 0.34 +0.5 487,591 - QEN71_RS31810 0.39 -0.2 487,769 + QEN71_RS31810 0.54 -1.2 487,769 + QEN71_RS31810 0.54 -0.1 487,770 - QEN71_RS31810 0.54 +0.8 487,780 - QEN71_RS31810 0.55 -1.0
Or see this region's nucleotide sequence