Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31460 and QEN71_RS31465 overlap by 7 nucleotides QEN71_RS31465 and QEN71_RS31470 are separated by 14 nucleotides
QEN71_RS31460: QEN71_RS31460 - response regulator, at 405,833 to 409,834
_RS31460
QEN71_RS31465: QEN71_RS31465 - diguanylate cyclase, at 409,828 to 410,781
_RS31465
QEN71_RS31470: QEN71_RS31470 - LysR family transcriptional regulator, at 410,796 to 411,677
_RS31470
Position (kb) 409
410
411 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 408.954 kb on + strand, within QEN71_RS31460 at 408.955 kb on - strand, within QEN71_RS31460 at 408.955 kb on - strand, within QEN71_RS31460 at 409.161 kb on + strand, within QEN71_RS31460 at 409.161 kb on + strand, within QEN71_RS31460 at 409.161 kb on + strand, within QEN71_RS31460 at 409.162 kb on - strand, within QEN71_RS31460 at 409.162 kb on - strand, within QEN71_RS31460 at 409.634 kb on + strand at 409.634 kb on + strand at 409.801 kb on + strand at 409.801 kb on + strand at 409.802 kb on - strand at 409.832 kb on + strand at 409.832 kb on + strand at 409.832 kb on + strand at 409.832 kb on + strand at 409.832 kb on + strand at 409.832 kb on + strand at 409.832 kb on + strand at 409.832 kb on + strand at 409.833 kb on - strand at 409.833 kb on - strand at 409.833 kb on - strand at 409.833 kb on - strand at 409.833 kb on - strand at 409.833 kb on - strand at 409.833 kb on - strand at 409.833 kb on - strand at 409.833 kb on - strand at 409.833 kb on - strand at 409.833 kb on - strand at 409.833 kb on - strand at 410.091 kb on + strand, within QEN71_RS31465 at 410.091 kb on + strand, within QEN71_RS31465 at 410.091 kb on + strand, within QEN71_RS31465 at 410.092 kb on - strand, within QEN71_RS31465 at 410.092 kb on - strand, within QEN71_RS31465 at 410.092 kb on - strand, within QEN71_RS31465 at 410.092 kb on - strand, within QEN71_RS31465 at 410.092 kb on - strand, within QEN71_RS31465 at 410.143 kb on + strand, within QEN71_RS31465 at 410.387 kb on - strand, within QEN71_RS31465 at 410.387 kb on - strand, within QEN71_RS31465 at 410.387 kb on - strand, within QEN71_RS31465 at 410.398 kb on + strand, within QEN71_RS31465 at 410.398 kb on + strand, within QEN71_RS31465 at 410.398 kb on + strand, within QEN71_RS31465 at 410.399 kb on - strand, within QEN71_RS31465 at 410.399 kb on - strand, within QEN71_RS31465 at 410.671 kb on - strand, within QEN71_RS31465 at 410.671 kb on - strand, within QEN71_RS31465 at 410.719 kb on + strand at 410.719 kb on + strand at 410.720 kb on - strand at 410.720 kb on - strand at 410.720 kb on - strand at 410.797 kb on + strand at 410.797 kb on + strand at 410.798 kb on - strand at 410.804 kb on + strand at 410.959 kb on - strand, within QEN71_RS31470 at 411.038 kb on - strand, within QEN71_RS31470 at 411.038 kb on - strand, within QEN71_RS31470 at 411.038 kb on - strand, within QEN71_RS31470 at 411.038 kb on - strand, within QEN71_RS31470 at 411.092 kb on + strand, within QEN71_RS31470 at 411.196 kb on + strand, within QEN71_RS31470 at 411.488 kb on + strand, within QEN71_RS31470 at 411.488 kb on + strand, within QEN71_RS31470 at 411.488 kb on + strand, within QEN71_RS31470 at 411.489 kb on - strand, within QEN71_RS31470 at 411.666 kb on + strand at 411.667 kb on - strand at 411.769 kb on + strand at 411.769 kb on + strand at 411.769 kb on + strand at 411.770 kb on - strand at 411.770 kb on - strand at 411.770 kb on - strand at 411.770 kb on - strand at 411.770 kb on - strand at 411.770 kb on - strand at 411.770 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 408,954 + QEN71_RS31460 0.78 +0.0 408,955 - QEN71_RS31460 0.78 -1.0 408,955 - QEN71_RS31460 0.78 -0.2 409,161 + QEN71_RS31460 0.83 +1.3 409,161 + QEN71_RS31460 0.83 -0.0 409,161 + QEN71_RS31460 0.83 -0.9 409,162 - QEN71_RS31460 0.83 -2.4 409,162 - QEN71_RS31460 0.83 -0.7 409,634 + +1.1 409,634 + +0.4 409,801 + +0.9 409,801 + -0.9 409,802 - -0.3 409,832 + -0.9 409,832 + -1.1 409,832 + -0.1 409,832 + -0.4 409,832 + +0.1 409,832 + -0.9 409,832 + -0.1 409,832 + -1.3 409,833 - +0.5 409,833 - -2.1 409,833 - +0.5 409,833 - +2.0 409,833 - +4.0 409,833 - -2.2 409,833 - -0.9 409,833 - -2.2 409,833 - +0.7 409,833 - +0.6 409,833 - -0.0 409,833 - +1.2 410,091 + QEN71_RS31465 0.28 -0.7 410,091 + QEN71_RS31465 0.28 -0.4 410,091 + QEN71_RS31465 0.28 +0.5 410,092 - QEN71_RS31465 0.28 +0.3 410,092 - QEN71_RS31465 0.28 +0.7 410,092 - QEN71_RS31465 0.28 +1.6 410,092 - QEN71_RS31465 0.28 +1.3 410,092 - QEN71_RS31465 0.28 +0.1 410,143 + QEN71_RS31465 0.33 -2.2 410,387 - QEN71_RS31465 0.59 +0.5 410,387 - QEN71_RS31465 0.59 -2.0 410,387 - QEN71_RS31465 0.59 +0.3 410,398 + QEN71_RS31465 0.60 +0.3 410,398 + QEN71_RS31465 0.60 -1.1 410,398 + QEN71_RS31465 0.60 -0.4 410,399 - QEN71_RS31465 0.60 -1.6 410,399 - QEN71_RS31465 0.60 -1.3 410,671 - QEN71_RS31465 0.88 -1.6 410,671 - QEN71_RS31465 0.88 -0.3 410,719 + +4.0 410,719 + -0.7 410,720 - -0.3 410,720 - +0.2 410,720 - -0.0 410,797 + -2.3 410,797 + +1.6 410,798 - -0.5 410,804 + -0.3 410,959 - QEN71_RS31470 0.18 +0.8 411,038 - QEN71_RS31470 0.27 +0.4 411,038 - QEN71_RS31470 0.27 -0.0 411,038 - QEN71_RS31470 0.27 +1.0 411,038 - QEN71_RS31470 0.27 +0.5 411,092 + QEN71_RS31470 0.34 +1.0 411,196 + QEN71_RS31470 0.45 -0.9 411,488 + QEN71_RS31470 0.78 -0.8 411,488 + QEN71_RS31470 0.78 +0.9 411,488 + QEN71_RS31470 0.78 -0.6 411,489 - QEN71_RS31470 0.79 -0.1 411,666 + -1.1 411,667 - +0.2 411,769 + -0.6 411,769 + +1.2 411,769 + +0.5 411,770 - -0.5 411,770 - -0.7 411,770 - -0.4 411,770 - -0.0 411,770 - +0.8 411,770 - +1.4 411,770 - +0.5
Or see this region's nucleotide sequence