Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29890 and QEN71_RS29895 are separated by 101 nucleotides QEN71_RS29895 and QEN71_RS29900 are separated by 8 nucleotides QEN71_RS29900 and QEN71_RS29905 overlap by 4 nucleotides QEN71_RS29905 and QEN71_RS29910 are separated by 346 nucleotides
QEN71_RS29890: QEN71_RS29890 - RcnB family protein, at 52,670 to 53,074
_RS29890
QEN71_RS29895: QEN71_RS29895 - hypothetical protein, at 53,176 to 53,838
_RS29895
QEN71_RS29900: QEN71_RS29900 - glycine zipper family protein, at 53,847 to 54,776
_RS29900
QEN71_RS29905: QEN71_RS29905 - PAAR domain-containing protein, at 54,773 to 55,324
_RS29905
QEN71_RS29910: QEN71_RS29910 - hypothetical protein, at 55,671 to 56,195
_RS29910
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 53.002 kb on - strand, within QEN71_RS29890 at 53.061 kb on - strand at 53.061 kb on - strand at 53.061 kb on - strand at 53.074 kb on + strand at 53.091 kb on - strand at 53.134 kb on + strand at 53.135 kb on - strand at 53.144 kb on + strand at 53.393 kb on + strand, within QEN71_RS29895 at 53.467 kb on + strand, within QEN71_RS29895 at 53.924 kb on + strand at 53.925 kb on - strand at 54.078 kb on + strand, within QEN71_RS29900 at 54.079 kb on - strand, within QEN71_RS29900 at 54.124 kb on + strand, within QEN71_RS29900 at 54.124 kb on + strand, within QEN71_RS29900 at 54.125 kb on - strand, within QEN71_RS29900 at 54.167 kb on - strand, within QEN71_RS29900 at 54.167 kb on - strand, within QEN71_RS29900 at 54.211 kb on - strand, within QEN71_RS29900 at 54.243 kb on + strand, within QEN71_RS29900 at 54.244 kb on - strand, within QEN71_RS29900 at 54.244 kb on - strand, within QEN71_RS29900 at 54.249 kb on + strand, within QEN71_RS29900 at 54.249 kb on + strand, within QEN71_RS29900 at 54.250 kb on - strand, within QEN71_RS29900 at 54.276 kb on - strand, within QEN71_RS29900 at 54.284 kb on + strand, within QEN71_RS29900 at 54.331 kb on + strand, within QEN71_RS29900 at 54.405 kb on + strand, within QEN71_RS29900 at 54.406 kb on - strand, within QEN71_RS29900 at 54.406 kb on - strand, within QEN71_RS29900 at 54.406 kb on - strand, within QEN71_RS29900 at 54.409 kb on + strand, within QEN71_RS29900 at 54.410 kb on - strand, within QEN71_RS29900 at 54.470 kb on - strand, within QEN71_RS29900 at 54.631 kb on + strand, within QEN71_RS29900 at 54.632 kb on - strand, within QEN71_RS29900 at 54.760 kb on + strand at 54.761 kb on - strand at 54.766 kb on + strand at 54.766 kb on + strand at 54.767 kb on - strand at 54.767 kb on - strand at 54.841 kb on - strand, within QEN71_RS29905 at 54.841 kb on - strand, within QEN71_RS29905 at 54.882 kb on + strand, within QEN71_RS29905 at 54.901 kb on + strand, within QEN71_RS29905 at 54.901 kb on + strand, within QEN71_RS29905 at 55.112 kb on - strand, within QEN71_RS29905 at 55.142 kb on - strand, within QEN71_RS29905 at 55.229 kb on + strand, within QEN71_RS29905 at 55.271 kb on + strand at 55.326 kb on + strand at 55.497 kb on + strand at 55.544 kb on + strand at 55.609 kb on - strand at 55.729 kb on - strand, within QEN71_RS29910
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 53,002 - QEN71_RS29890 0.82 +0.9 53,061 - -2.0 53,061 - +0.7 53,061 - -1.1 53,074 + -0.3 53,091 - +2.8 53,134 + -0.0 53,135 - +1.1 53,144 + +0.8 53,393 + QEN71_RS29895 0.33 +1.4 53,467 + QEN71_RS29895 0.44 +0.3 53,924 + +0.3 53,925 - +0.7 54,078 + QEN71_RS29900 0.25 -0.9 54,079 - QEN71_RS29900 0.25 +1.3 54,124 + QEN71_RS29900 0.30 +0.9 54,124 + QEN71_RS29900 0.30 +0.3 54,125 - QEN71_RS29900 0.30 -1.0 54,167 - QEN71_RS29900 0.34 -1.0 54,167 - QEN71_RS29900 0.34 +2.6 54,211 - QEN71_RS29900 0.39 -0.0 54,243 + QEN71_RS29900 0.43 +1.3 54,244 - QEN71_RS29900 0.43 +0.2 54,244 - QEN71_RS29900 0.43 -0.7 54,249 + QEN71_RS29900 0.43 -0.5 54,249 + QEN71_RS29900 0.43 +0.3 54,250 - QEN71_RS29900 0.43 +1.7 54,276 - QEN71_RS29900 0.46 -0.1 54,284 + QEN71_RS29900 0.47 -0.3 54,331 + QEN71_RS29900 0.52 -0.5 54,405 + QEN71_RS29900 0.60 -0.0 54,406 - QEN71_RS29900 0.60 +0.5 54,406 - QEN71_RS29900 0.60 -0.0 54,406 - QEN71_RS29900 0.60 +1.0 54,409 + QEN71_RS29900 0.60 +1.0 54,410 - QEN71_RS29900 0.61 -0.7 54,470 - QEN71_RS29900 0.67 +0.2 54,631 + QEN71_RS29900 0.84 +0.7 54,632 - QEN71_RS29900 0.84 +0.2 54,760 + -0.6 54,761 - -0.0 54,766 + -0.0 54,766 + -0.5 54,767 - +0.2 54,767 - -2.1 54,841 - QEN71_RS29905 0.12 +0.3 54,841 - QEN71_RS29905 0.12 -0.0 54,882 + QEN71_RS29905 0.20 -0.0 54,901 + QEN71_RS29905 0.23 -0.8 54,901 + QEN71_RS29905 0.23 +0.3 55,112 - QEN71_RS29905 0.61 -1.5 55,142 - QEN71_RS29905 0.67 +1.3 55,229 + QEN71_RS29905 0.83 +0.7 55,271 + +0.2 55,326 + +1.8 55,497 + -1.1 55,544 + +0.7 55,609 - -1.3 55,729 - QEN71_RS29910 0.11 +1.0
Or see this region's nucleotide sequence