Experiment: Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS25525 and QEN71_RS25530 are separated by 94 nucleotides QEN71_RS25530 and QEN71_RS25535 are separated by 127 nucleotides QEN71_RS25535 and QEN71_RS25540 are separated by 309 nucleotides
QEN71_RS25525: QEN71_RS25525 - integrase domain-containing protein, at 5,681,465 to 5,682,484
_RS25525
QEN71_RS25530: QEN71_RS25530 - hypothetical protein, at 5,682,579 to 5,683,034
_RS25530
QEN71_RS25535: QEN71_RS25535 - hypothetical protein, at 5,683,162 to 5,683,914
_RS25535
QEN71_RS25540: QEN71_RS25540 - hypothetical protein, at 5,684,224 to 5,685,066
_RS25540
Position (kb) 5683
5684 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 5682.335 kb on + strand, within QEN71_RS25525 at 5682.335 kb on + strand, within QEN71_RS25525 at 5682.336 kb on - strand, within QEN71_RS25525 at 5682.336 kb on - strand, within QEN71_RS25525 at 5682.512 kb on + strand at 5682.513 kb on - strand at 5682.559 kb on - strand at 5682.559 kb on - strand at 5682.563 kb on + strand at 5682.702 kb on - strand, within QEN71_RS25530 at 5682.709 kb on - strand, within QEN71_RS25530 at 5682.709 kb on - strand, within QEN71_RS25530 at 5682.709 kb on - strand, within QEN71_RS25530 at 5682.721 kb on - strand, within QEN71_RS25530 at 5682.940 kb on - strand, within QEN71_RS25530 at 5683.051 kb on + strand at 5683.051 kb on + strand at 5683.052 kb on - strand at 5683.110 kb on + strand at 5683.151 kb on - strand at 5683.174 kb on - strand at 5683.176 kb on + strand at 5683.178 kb on + strand at 5683.179 kb on - strand at 5683.179 kb on - strand at 5683.238 kb on - strand, within QEN71_RS25535 at 5683.336 kb on + strand, within QEN71_RS25535 at 5683.337 kb on - strand, within QEN71_RS25535 at 5683.425 kb on + strand, within QEN71_RS25535 at 5683.425 kb on + strand, within QEN71_RS25535 at 5683.426 kb on - strand, within QEN71_RS25535 at 5683.578 kb on + strand, within QEN71_RS25535 at 5683.578 kb on + strand, within QEN71_RS25535 at 5683.579 kb on - strand, within QEN71_RS25535 at 5683.858 kb on + strand at 5683.913 kb on - strand at 5683.916 kb on + strand at 5684.019 kb on + strand at 5684.171 kb on - strand at 5684.184 kb on - strand at 5684.184 kb on - strand at 5684.222 kb on + strand at 5684.222 kb on + strand at 5684.223 kb on - strand at 5684.331 kb on - strand, within QEN71_RS25540 at 5684.331 kb on - strand, within QEN71_RS25540 at 5684.403 kb on - strand, within QEN71_RS25540 at 5684.403 kb on - strand, within QEN71_RS25540 at 5684.403 kb on - strand, within QEN71_RS25540 at 5684.404 kb on + strand, within QEN71_RS25540 at 5684.405 kb on - strand, within QEN71_RS25540 at 5684.412 kb on - strand, within QEN71_RS25540 at 5684.454 kb on - strand, within QEN71_RS25540 at 5684.574 kb on + strand, within QEN71_RS25540 at 5684.635 kb on + strand, within QEN71_RS25540 at 5684.690 kb on + strand, within QEN71_RS25540 at 5684.691 kb on - strand, within QEN71_RS25540 at 5684.761 kb on - strand, within QEN71_RS25540 at 5684.885 kb on - strand, within QEN71_RS25540
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 5,682,335 + QEN71_RS25525 0.85 -0.7 5,682,335 + QEN71_RS25525 0.85 +1.2 5,682,336 - QEN71_RS25525 0.85 -0.9 5,682,336 - QEN71_RS25525 0.85 -1.1 5,682,512 + -1.9 5,682,513 - -0.5 5,682,559 - +0.6 5,682,559 - +1.6 5,682,563 + +0.3 5,682,702 - QEN71_RS25530 0.27 -1.4 5,682,709 - QEN71_RS25530 0.29 +0.3 5,682,709 - QEN71_RS25530 0.29 -0.3 5,682,709 - QEN71_RS25530 0.29 +0.2 5,682,721 - QEN71_RS25530 0.31 +0.4 5,682,940 - QEN71_RS25530 0.79 -0.4 5,683,051 + -0.8 5,683,051 + -2.3 5,683,052 - -0.1 5,683,110 + -0.5 5,683,151 - +1.3 5,683,174 - -2.2 5,683,176 + +0.6 5,683,178 + -0.8 5,683,179 - +0.4 5,683,179 - +0.0 5,683,238 - QEN71_RS25535 0.10 -0.1 5,683,336 + QEN71_RS25535 0.23 -0.1 5,683,337 - QEN71_RS25535 0.23 -0.3 5,683,425 + QEN71_RS25535 0.35 -1.5 5,683,425 + QEN71_RS25535 0.35 +0.9 5,683,426 - QEN71_RS25535 0.35 +1.4 5,683,578 + QEN71_RS25535 0.55 -0.7 5,683,578 + QEN71_RS25535 0.55 +8.9 5,683,579 - QEN71_RS25535 0.55 +1.1 5,683,858 + +0.7 5,683,913 - -1.8 5,683,916 + +1.3 5,684,019 + +0.1 5,684,171 - -0.2 5,684,184 - -1.5 5,684,184 - -0.5 5,684,222 + -0.7 5,684,222 + +1.2 5,684,223 - -0.9 5,684,331 - QEN71_RS25540 0.13 +0.3 5,684,331 - QEN71_RS25540 0.13 -1.7 5,684,403 - QEN71_RS25540 0.21 -0.6 5,684,403 - QEN71_RS25540 0.21 +1.1 5,684,403 - QEN71_RS25540 0.21 +0.5 5,684,404 + QEN71_RS25540 0.21 -1.1 5,684,405 - QEN71_RS25540 0.21 +1.3 5,684,412 - QEN71_RS25540 0.22 +0.1 5,684,454 - QEN71_RS25540 0.27 +0.0 5,684,574 + QEN71_RS25540 0.42 +0.4 5,684,635 + QEN71_RS25540 0.49 -2.1 5,684,690 + QEN71_RS25540 0.55 -0.3 5,684,691 - QEN71_RS25540 0.55 +0.4 5,684,761 - QEN71_RS25540 0.64 +2.7 5,684,885 - QEN71_RS25540 0.78 -0.7
Or see this region's nucleotide sequence